Study of the microbial biomass and diversity in Lake Tanganyika

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Sources of carbon for the microbial food web in Lake Tanganyika: relation between primary and bacterial production

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First multidisciplinary study of Lake Tanganyika picoplankton

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Small secrets of Lake Tanganyika, or a multidisciplinary approach of the picoplankton of an African great Lake

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Drivers of phytoplankton diversity in Lake Tanganyika

peer reviewedIn keeping with the theme of this volume, the present article commemorates the 50 years of Hutchinson's (Am Nat 93:145-159, 1959) famous publication on the 'very general question of animal diversity', which obviously leads to the more important question regarding the driving forces of biodiversity and their limitation in various habitats. The study of phytoplankton in large lakes is a challenging task which requires the use of a wide variety of techniques to capture the range of spatial and temporal variations. The analysis of marker pigments may provide an adequate tool for phytoplankton surveys in large water bodies, thanks to automated analysis for processing numerous individual samples, and by achieving sufficient taxonomic resolution for ecological studies. Chlorophylls and carotenoids were analysed by HPLC in water column samples of Lake Tanganyika from 2002 through 2006, at two study sites, off Kigoma (north basin) and off Mpulungu (south basin). Using the CHEMTAX software for calculating contributions of the main algal groups to chlorophyll a, variations of phytoplankton composition and biomass were determined. We also investigated selected samples according to standard taxonomic techniques for elucidating the dominant species composition. Most of the phytoplankton biomass was located in the 0-40 m layer, with maxima at 0 or 20 m, and more rarely at 40 m. Deep chlorophyll maxima (DCM) and surface 'blooms' were occasionally observed. The phytoplankton assemblage was essentially dominated by chlorophytes and cyanobacteria, with diatoms developing mainly in the dry season. The dominant cyanobacteria were very small unicells (mostly Synechococcus), which were much more abundant in the southern basin, whereas green algae dominated on average at the northern site. A canonical correspondence analysis (CCA) including the main limnological variables, dissolved nutrients and zooplankton abundance was run to explore environment-phytoplankton relations. The CCA points to physical factors, site and season as key determinants of the phytoplankton assemblage, but also indicates a significant role, depending on the studied site, of calanoid copepods and of nauplii stages. Our data suggest that the factors allowing coexistence of several phytoplankton taxa in the pelagic zone of Lake Tanganyika are likely differential vertical distribution in the water column, which allows spatial partitioning of light and nutrients, and temporal variability (occurring at time scales preventing long-term dominance by a single taxon), along with effects of predation by grazers. © 2010 Springer Science+Business Media B.V

Phytoplankton of Lake Kivu

peer reviewedThis chapter reviews taxonomic composition, biomass, production and nutrient limitation of the phytoplankton of Lake Kivu. Present Lake Kivu phytoplankton is dominated by cyanobacteria – mainly Synechococcus spp. and thin filaments of Planktolyngbya limnetica – and by pennate diatoms, among which Nitzschia bacata and Fragilaria danica are dominant. Seasonal shifts occur, with cyanobacteria developing more in the rainy season, and the diatoms in the dry season. Other groups present are cryptophytes, chrysophytes, chlorophytes and dinoflagellates. According to a survey conducted in the period 2002–2008, the composition of the phytoplankton assemblage was quasi homogeneous among lake basins. The mean euphotic depth varied between 17 and 20 m, and the increase in the ratio between mixed layer depth and euphotic depth to about 2 in the dry season may have selected for diatoms and cryptophytes, which tended to present their maximal development in this season, when cyanobacteria slightly decreased. Mean chlorophyll a concentration was 2.16 mg m−3, and the mean daily primary production was 0.62 g C m−2 day−1 (range, 0.14–1.92), i.e. in the same range as in other large oligotrophic East African Rift lakes. Seston elemental ratios indicated a moderate P deficiency during the dry, mixed season and a severe P limitation during part of the rainy, stratified season; the C:N ratio indicated a moderate N limitation throughout the year. Nutrient addition assays pointed to a direct N limitation and co-limitation by P during rainy seasons and P or N limitation during dry seasons depending on the year. Thus, phytoplankton ecology in Lake Kivu does not differ from that of other Rift lakes, where seasonal variations result in a trade-off between low light with high nutrient supply and high light with low nutrient supply. Phytoplankton production in Lake Kivu is also similar to that of other Rift lakes, and nutrient limitation of phytoplankton growth may occur as a result of variable availability of N and P, as in Lakes Tanganyika and Malawi, even though the extent of P limitation seems greater in Lake Kivu

Microbial Ecology of Lake Kivu

peer reviewedWe review available data on archaea, bacteria and small eukaryotes in an attempt to provide a general picture of microbial diversity, abundances and microbe-driven processes in Lake Kivu surface and intermediate waters (ca. 0–100 m). The various water layers present contrasting physical and chemical properties and harbour very different microbial communities supported by the vertical redox structure. For instance, we found a clear vertical segregation of archaeal and bacterial assemblages between the oxic and the anoxic zone of the surface waters. The presence of specific bacterial (e.g. Green Sulfur Bacteria) and archaeal (e.g. ammonia-oxidising archaea) communities and the prevailing physico-chemical conditions point towards the redoxcline as the most active and metabolically diverse water layer. The archaeal assemblage in the surface and intermediate water column layers was mainly composed by the phylum Crenarchaeota , by the recently defined phylum Thaumarchaeota and by the phylum Euryarchaeota . In turn, the bacterial assemblage comprised mainly ubiquitous members of planktonic assemblages of freshwater environments (Actinobacteria, Bacteroidetes and Betaproteobacteria among others) and other less commonly retrieved phyla (e.g. Chlorobi, Clostridium and Deltaproteobacteria). The community of small eukaryotes (<5 µm) mainly comprised Stramenopiles , Alveolata , Cryptophyta , Chytridiomycota , Kinetoplastea and Choanoflagellida, by decreasing order of richness. The total prokaryotic abundance ranged between 0.5 × 10^6 and 2.0 × 10^6 cells mL−1 , with maxima located in the 0–20 m layer, while phycoerythrin-rich Synechococcus-like picocyanobacteria populations were comprised between 0.5 × 10^5 and 2.0 × 10^5 cells mL−1 in the same surface layer. Brown-coloured species of Green Sulfur Bacteria permanently developed at 11m depth in Kabuno Bay and sporadically in the anoxic waters of the lower mixolimnion of the main basin. The mean bacterial production was estimated to 336 mg C m−2 day−1 . First estimates of the re-assimilation by bacterioplankton of dissolved organic matter excreted by phytoplankton showed high values of dissolved primary production (ca. 50% of total production). The bacterial carbon demand can totally be fuelled by phytoplankton production. Overall, recent studies have revealed a high microbial diversity in Lake Kivu, and point towards a central role of microbes in the biogeochemical and ecological functioning of the surface layers, comprising the mixolimnion and the upper chemocline

Lake Kivu Research: Conclusions and Perspectives

peer reviewedIn this chapter the knowledge gained from the interdisciplinary research on Lake Kivu presented in the previous chapters is synthesized. The importance of the sublacustrine springs as a driving force for physical and biogeochemical processes is highlighted, the special properties of the lake’s food web structure are discussed, and the consequences and impacts of both the introduction of a new fish species and methane extraction are evaluated. Finally, a list of open research questions illustrates that Lake Kivu has by far not yet revealed all of its secrets