Multiscale photosynthetic exciton transfer

Photosynthetic light harvesting provides a natural blueprint for bioengineered and biomimetic solar energy and light detection technologies. Recent evidence suggests some individual light harvesting protein complexes (LHCs) and LHC subunits efficiently transfer excitons towards chemical reaction centers (RCs) via an interplay between excitonic quantum coherence, resonant protein vibrations, and thermal decoherence. The role of coherence in vivo is unclear however, where excitons are transferred through multi-LHC/RC aggregates over distances typically large compared with intra-LHC scales. Here we assess the possibility of long-range coherent transfer in a simple chromophore network with disordered site and transfer coupling energies. Through renormalization we find that, surprisingly, decoherence is diminished at larger scales, and long-range coherence is facilitated by chromophoric clustering. Conversely, static disorder in the site energies grows with length scale, forcing localization. Our results suggest sustained coherent exciton transfer may be possible over distances large compared with nearest-neighbour (n-n) chromophore separations, at physiological temperatures, in a clustered network with small static disorder. This may support findings suggesting long-range coherence in algal chloroplasts, and provides a framework for engineering large chromophore or quantum dot high-temperature exciton transfer networks.Comment: 9 pages, 6 figures. A significantly updated version is now published online by Nature Physics (2012

Generalized Fano lineshapes reveal exceptional points in photonic molecules

The optical behavior of coupled systems, in which the breaking of parity and time-reversal symmetry occurs, is drawing increasing attention to address the physics of the exceptional point singularity, i.e., when the real and imaginary parts of the normal-mode eigenfrequencies coincide. At this stage, fascinating phenomena are predicted, including electromagnetic-induced transparency and phase transitions. To experimentally observe the exceptional points, the near-field coupling to waveguide proposed so far was proved to work only in peculiar cases. Here, we extend the interference detection scheme, which lies at the heart of the Fano lineshape, by introducing generalized Fano lineshapes as a signature of the exceptional point occurrence in resonant-scattering experiments. We investigate photonic molecules and necklace states in disordered media by means of a near-field hyperspectral mapping. Generalized Fano profiles in material science could extend the characterization of composite nanoresonators, semiconductor nanostructures, and plasmonic and metamaterial devices

Snake Cytotoxins Bind to Membranes via Interactions with Phosphatidylserine Head Groups of Lipids

The major representatives of Elapidae snake venom, cytotoxins (CTs), share similar three-fingered fold and exert diverse range of biological activities against various cell types. CT-induced cell death starts from the membrane recognition process, whose molecular details remain unclear. It is known, however, that the presence of anionic lipids in cell membranes is one of the important factors determining CT-membrane binding. In this work, we therefore investigated specific interactions between one of the most abundant of such lipids, phosphatidylserine (PS), and CT 4 of Naja kaouthia using a combined, experimental and modeling, approach. It was shown that incorporation of PS into zwitterionic liposomes greatly increased the membrane-damaging activity of CT 4 measured by the release of the liposome-entrapped calcein fluorescent dye. The CT-induced leakage rate depends on the PS concentration with a maximum at approximately 20% PS. Interestingly, the effects observed for PS were much more pronounced than those measured for another anionic lipid, sulfatide. To delineate the potential PS binding sites on CT 4 and estimate their relative affinities, a series of computer simulations was performed for the systems containing the head group of PS and different spatial models of CT 4 in aqueous solution and in an implicit membrane. This was done using an original hybrid computational protocol implementing docking, Monte Carlo and molecular dynamics simulations. As a result, at least three putative PS-binding sites with different affinities to PS molecule were delineated. Being located in different parts of the CT molecule, these anion-binding sites can potentially facilitate and modulate the multi-step process of the toxin insertion into lipid bilayers. This feature together with the diverse binding affinities of the sites to a wide variety of anionic targets on the membrane surface appears to be functionally meaningful and may adjust CT action against different types of cells

Phosphatidylserine targeting for diagnosis and treatment of human diseases

Cells are able to execute apoptosis by activating series of specific biochemical reactions. One of the most prominent characteristics of cell death is the externalization of phosphatidylserine (PS), which in healthy cells resides predominantly in the inner leaflet of the plasma membrane. These features have made PS-externalization a well-explored phenomenon to image cell death for diagnostic purposes. In addition, it was demonstrated that under certain conditions viable cells express PS at their surface such as endothelial cells of tumor blood vessels, stressed tumor cells and hypoxic cardiomyocytes. Hence, PS has become a potential target for therapeutic strategies aiming at Targeted Drug Delivery. In this review we highlight the biomarker PS and various PS-binding compounds that have been employed to target PS for diagnostic purposes. We emphasize the 35 kD human protein annexin A5, that has been developed as a Molecular Imaging agent to measure cell death in vitro, and non-invasively in vivo in animal models and in patients with cardiovascular diseases and cancer. Recently focus has shifted from diagnostic towards therapeutic applications employing annexin A5 in strategies to deliver drugs to cells that express PS at their surface

Flow and deformation of the capillary glycocalyx in the wake of a leukocyte

An analysis is presented of the axisymmetric axial and radial flow and deformation fields throughout the endothelial-cell glycocalyx surface layer in the wake region behind a leukocyte moving steadily through a capillary. The glycocalyx, modeled as a thin poroelastic surface layer lining the capillary wall, is assumed to consist of a binary mixture of a linearly viscous fluid constituent and an isotropic, highly compressible, linearly elastic solid constituent having a vanishingly small solid-volume fraction. Invoking the asymptotic approximations of lubrication theory in a frame of reference translating with the leukocyte, closed-form solutions are obtained to the leading-order boundary-value problems governing the axial and radial flow and deformation fields throughout the glycocalyx as well as the axial and radial flow fields throughout the free capillary lumen within the wake. A simple asymptotic expression is obtained for the length l(char) of the wake region in terms of the translational speed U-0 of the leukocyte, and the equilibrium thickness h(0), permeability k(0), and aggregate elastic modulus H-A of the glycocalyx. The predicted wake length, as seen from an observer moving in a reference frame attached to the leukocyte, is consistent with the recovery time predicted from a one-dimensional analysis of glycocalyx deformation through a quiescent inviscid fluid. The two-dimensional fluid dynamical analysis presented here thus provides the appropriate relationships for extracting estimates of the mechanoelectrochemical properties of the glycocalyx from physiologically realistic constitutive models developed under simplified one-dimensional flow regimes. The directly measurable quantities l(char), U-0, and h(0), which are obtainable from in vivo observations of the wake region behind a leukocyte moving steadily through a capillary, can therefore be connected, through the results of this analysis, to estimates of the mechanoelectrochemical properties of the glycocalyx on vascular endothelial cells. (C) 2005 American Institute of Physics

On the motion of a sphere in a Stokes flow parallel to a Brinkman half-space

A three-dimensional analysis is presented of the Stokes flow, adjacent to a Brinkman half-space, that is induced or altered by the presence of a sphere in the flow field that (a) translates uniformly without rotating, (b) rotates uniformly without translating, or (c) is fixed in a shear flow that is uniform in the far field. The linear superposition of these three flow regimes is also considered for the special case of the free motion of a neutrally buoyant sphere. Exact solutions to the momentum equations are obtained in terms of infinite series expansions in the Stokes-flow region and in terms of integral transforms in the Brinkman medium. Attention is focused on the approach to the asymptotic limit as the ratio of Newtonian- to Darcy-drag forces vanishes. From the leading-order asymptotic approximations, implicit recursion relations are derived to determine the coefficients in the series solutions such that those solutions exactly satisfy the boundary and interfacial conditions as well as the continuity equations in both the Stokes-flow and Brinkman regions. For each of the three flow regimes considered, results are presented in terms of the drag force on the sphere and torque about the sphere centre as a function of the dimensionless separation distance between the sphere and the interfacial plane for several small values of the dimensionless hydraulic permeability of the Brinkman medium. Finally, the free motion of a neutrally buoyant sphere is found by requiring that the net hydrodynamic drag force and torque acting on the sphere vanish. Results for this case are presented in terms of the dimensionless translational and rotational speeds of the sphere as a function of the dimensionless separation distance for several small values of the dimensionless hydraulic permeability. The work is motivated by its potential application as an analytical tool in the study of near-wall microfluldics in the vicinity of the glycocalyx surface layer on vascular endothelium and in microelectromechanical systems devices where charged macromolecules may become adsorbed to microchannel walls

The effects of seed mix and management on the abundance of desirable and pernicious unsown species in arable buffer strip communities

Buffer strips are refuges for a variety of plants providing resources, such as pollen, nectar and seeds, for higher trophic levels, including invertebrates, mammals and birds. Margins can also harbour plant species that are potentially injurious to the adjacent arable crop (undesirable species). Sowing perennial species in non-cropped buffer strips can reduce weed incidence, but limits the abundance of annuals with the potential to support wider biodiversity (desirable species). We investigated the responses of unsown plant species present in buffer strips established with three different seed mixes managed annually with three contrasting management regimes (cutting, sward scarification and selective graminicide). Sward scarification had the strongest influence on the unsown desirable (e.g. Sonchus spp.) and unsown pernicious (e.g. Elytrigia repens) species, and was generally associated with higher cover values of these species. However, abundances of several desirable weed species, in particular Poa annua, were not promoted by scarification. The treatments of cutting and graminicide tended to have negative impacts on the unsown species, except for Cirsium vulgare, which increased with graminicide application. Differences in unsown species cover between seed mixes were minimal, although the grass-only mix was more susceptible to establishment by C. vulgare and Galium aparine than the two grass and forb mixes. Annual scarification can enable desirable annuals and sown perennials to co-exist, however, this practice can also promote pernicious species, and so is unlikely to be widely adopted as a management tool in its current form