Energetics and Compatibility of Plasticizers in Composite Solid Propellants

In this paper a comparative analysis on the energetics of ester type plasticizers such as dioctyl adipate (DOA), dioctyl phthalate (DOP),dibutyl sebacate (DBS), isodecyl pelargonate (IDP), trioctylphosphate (TOF), diethyl phthalate (DEP), tricresyl phosphate (TCP)and dibutyl phthalate (DBP) and hydrocarbon type plasticizers such as polybutene (PB), spindle oil, naphthenic oil, polymer extender oil(PEO) and poly isobutylene (PIB) and the impact of some of the plasticizers on the work ability, pot life and mechanical properties of propellants based on two selected polymeric binders namely polybutadiene-acrylic acid-acrylonitrile (PBAN) ter polymer andhydroxyl terminated polybutadiene (HTPB) have been reported. The compatibility of all the plasticizers on HTPB binder was also studied at different concentration levels and temperatures using Brookfield viscometer and reported. The mechanism of plasticization is also reviewed

Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions

The APOBEC3 (A3) family of human cytidine deaminases is renowned for providing a first line of defense against many exogenous and endogenous retroviruses. However, the ability of these proteins to deaminate deoxycytidines in ssDNA makes A3s a double-edged sword. When overexpressed, A3s can mutate endogenous genomic DNA resulting in a variety of cancers. Although the sequence context for mutating DNA varies among A3s, the mechanism for substrate sequence specificity is not well understood. To characterize substrate specificity of A3A, a systematic approach was used to quantify the affinity for substrate as a function of sequence context, length, secondary structure, and solution pH. We identified the A3A ssDNA binding motif as (T/C)TC(A/G), which correlated with enzymatic activity. We also validated that A3A binds RNA in a sequence specific manner. A3A bound tighter to substrate binding motif within a hairpin loop compared to linear oligonucleotide, suggesting A3A affinity is modulated by substrate structure. Based on these findings and previously published A3A-ssDNA co-crystal structures, we propose a new model with intra-DNA interactions for the molecular mechanism underlying A3A sequence preference. Overall, the sequence and structural preferences identified for A3A leads to a new paradigm for identifying A3A\u27s involvement in mutation of endogenous or exogenous DNA

Incompatibility-Driven Self-Organization in Polycatenar Liquid Crystals Bearing Both Hydrocarbon and Fluorocarbon Chains

The synthesis and liquid crystal properties are reported for tri-and tetra-catenar mesogens in which both hydrocarbon and semiperfluorocarbon chains have been incorporated. In the tricatenar mesogens, the lamellar spacing in the smectic C phase of the all-hydrocarbon mesogen almost doubles when the isolated hydrocarbon chain is replaced by a semiperfluorinated chain on account of the localized segregation in different sublayers between the two chain types. In the tetracatenar materials, the replacement of at least one hydrocarbon chain by semiperfluorocarbon chains is sufficient to promote columnar phase formation, but when the molecule has two hydrocarbon chains at one end and two semiperfluorocarbon chains at the other, the requirement for localized phase segregation leads to the formation of a rectangular phase with very large lattice parameters. The juxtaposition of terminal chains of different nature within the same molecular structure thus leads to a reduction in mesophase symmetry and the emergence of more complex supramolecular organization

Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity

Nucleic acid editing enzymes are essential components of the immune system that lethally mutate viral pathogens and somatically mutate immunoglobulins, and contribute to the diversification and lethality of cancers. Among these enzymes are the seven human APOBEC3 deoxycytidine deaminases, each with unique target sequence specificity and subcellular localization. While the enzymology and biological consequences have been extensively studied, the mechanism by which APOBEC3s recognize and edit DNA remains elusive. Here we present the crystal structure of a complex of a cytidine deaminase with ssDNA bound in the active site at 2.2 A. This structure not only visualizes the active site poised for catalysis of APOBEC3A, but pinpoints the residues that confer specificity towards CC/TC motifs. The APOBEC3A-ssDNA complex defines the 5\u27-3\u27 directionality and subtle conformational changes that clench the ssDNA within the binding groove, revealing the architecture and mechanism of ssDNA recognition that is likely conserved among all polynucleotide deaminases, thereby opening the door for the design of mechanistic-based therapeutics

Unique structural solution from a VH3-30 antibody targeting the hemagglutinin stem of influenza A viruses

Broadly neutralizing antibodies (bnAbs) targeting conserved influenza A virus (IAV) hemagglutinin (HA) epitopes can provide valuable information for accelerating universal vaccine designs. Here, we report structural details for heterosubtypic recognition of HA from circulating and emerging IAVs by the human antibody 3I14. Somatic hypermutations play a critical role in shaping the HCDR3, which alone and uniquely among VH3-30 derived antibodies, forms contacts with five sub-pockets within the HA-stem hydrophobic groove. 3I14 light-chain interactions are also key for binding HA and contribute a large buried surface area spanning two HA protomers. Comparison of 3I14 to bnAbs from several defined classes provide insights to the bias selection of VH3-30 antibodies and reveals that 3I14 represents a novel structural solution within the VH3-30 repertoire. The structures reported here improve our understanding of cross-group heterosubtypic binding activity, providing the basis for advancing immunogen designs aimed at eliciting a broadly protective response to IAV

Low-Cost HIV-1 Diagnosis and Quantification in Dried Blood Spots by Real Time PCR

BACKGROUND: Rapid and cost-effective methods for HIV-1 diagnosis and viral load monitoring would greatly enhance the clinical management of HIV-1 infected adults and children in limited-resource settings. Recent recommendations to treat perinatally infected infants within the first year of life are feasible only if early diagnosis is routinely available. Dried blood spots (DBS) on filter paper are an easy and convenient way to collect and transport blood samples. A rapid and cost effective method to diagnose and quantify HIV-1 from DBS is urgently needed to facilitate early diagnosis of HIV-1 infection and monitoring of antiretroviral therapy. METHODS AND FINDINGS: We have developed a real-time LightCycler (rtLC) PCR assay to detect and quantify HIV-1 from DBS. HIV-1 RNA extracted from DBS was amplified in a one-step, single-tube system using primers specific for long-terminal repeat sequences that are conserved across all HIV-1 clades. SYBR Green dye was used to quantify PCR amplicons and HIV-1 RNA copy numbers were determined from a standard curve generated using serially diluted known copies of HIV-1 RNA. This assay detected samples across clades, has a dynamic range of 5 log(10), and %CV <8% up to 4 log(10) dilution. Plasma HIV-1 RNA copy numbers obtained using this method correlated well with the Roche Ultrasensitive (r = 0.91) and branched DNA (r = 0.89) assays. The lower limit of detection (95%) was estimated to be 136 copies. The rtLC DBS assay was 2.5 fold rapid as well as 40-fold cheaper when compared to commercial assays. Adaptation of the assay into other real-time systems demonstrated similar performance. CONCLUSIONS: The accuracy, reliability, genotype inclusivity and affordability, along with the small volumes of blood required for the assay suggest that the rtLC DBS assay will be useful for early diagnosis and monitoring of pediatric HIV-1 infection in resource-limited settings

Analysis of internal temperature variations of lithium-ion batteries during fast charging

One of the major challenges that limits the fast charging of Lithium-ion batteries is Lithium (Li) plating at low temperatures. To reduce Li-plating an increased environmental temperature is commonly used. However, the uncertainties in the measurement of key battery internal states such as temperature, is a limiting factor to find the best fast charging profile that considers battery performance, degradation, and safety of the electric vehicles (EVs). We have used our state-of-the-art instrumented cells equipped with internal data acquisition and microcontroller, forming smart cells, that enable sensor data to be transmitted via a USB to a data logger. We demonstrate here that commercially available 21700 format cells were successfully instrumented and gave direct information on internal temperature for continuous fast charging rates from C/2 to 2.5C. The internal temperature was found to be considerably higher than that of the surface of the cell (between 10 and 14°C at 2.5C charge rate). A gradient of up to 2°C was found between the positive and negative end of each cell that became more prominent for higher charge rates. Li-plating was detected for all C-rates below 25°C even though, the internal temperature rose above 30°C when the cells were charged at 2.5C with an ambient temperature of 0°C. At a higher ambient temperature of 40°C, the cell’s internal temperature rose (to ~62°C) beyond the safe limits defined by the manufacturer’s datasheet whilst the external temperature recorded (~52°C) was within the manufacturer’s defined safe operating limits

Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody

Influenza A virus (IAV), a major cause of human morbidity and mortality, continuously evolves in response to selective pressures. Stem-directed, broadly neutralizing antibodies (sBnAbs) targeting influenza hemagglutinin (HA) are a promising therapeutic strategy, but neutralization escape mutants can develop. We used an integrated approach combining viral passaging, deep sequencing, and protein structural analyses to define escape mutations and mechanisms of neutralization escape in vitro for the F10 sBnAb. IAV was propagated with escalating concentrations of F10 over serial passages in cultured cells to select for escape mutations. Viral sequence analysis revealed three mutations in HA and one in neuraminidase (NA). Introduction of these specific mutations into IAV through reverse genetics confirmed their roles in resistance to F10. Structural analyses revealed that the selected HA mutations (S123G, N460S, and N203V) are away from the F10 epitope but may indirectly impact influenza receptor binding, endosomal fusion, or budding. The NA mutation E329K, which was previously identified to be associated with antibody escape, affects the active site of NA, highlighting the importance of the balance between HA and NA function for viral survival. Thus, whole genome population sequencing enables the identification of viral resistance mutations responding to antibody-induced selective pressure.IMPORTANCE Influenza A virus is a public health threat for which currently available vaccines are not always effective. Broadly neutralizing antibodies that bind to the highly-conserved stem region of influenza hemagglutinin (HA) can neutralize many influenza strains. To understand how influenza virus can become resistant or escape such antibodies, we propagated influenza A virus in vitro with escalating concentrations of antibody and analyzed viral populations with whole genome sequencing. We identified HA mutations near and distal to the antibody binding epitope that conferred resistance to antibody neutralization. Additionally, we identified a neuraminidase (NA) mutation that allowed the virus to grow in the presence of high concentrations of the antibody. Virus carrying dual mutations in HA and NA also grew under high antibody concentrations. We show that NA mutations mediate the escape of neutralization by antibodies against HA, highlighting the importance of a balance between HA and NA for optimal virus function