Elevator-type mechanisms of membrane transport

Membrane transporters are integral membrane proteins that mediate the passage of solutes across lipid bilayers. These proteins undergo conformational transitions between outward- and inward-facing states, which lead to alternating access of the substrate-binding site to the aqueous environment on either side of the membrane. Dozens of different transporter families have evolved, providing a wide variety of structural solutions to achieve alternating access. A sub-set of structurally diverse transporters operate by mechanisms that are collectively named 'elevator-type'. These transporters have one common characteristic: they contain a distinct protein domain that slides across the membrane as a rigid body, and in doing so it 'drags" the transported substrate along. Analysis of the global conformational changes that take place in membrane transporters using elevator-type mechanisms reveals that elevator-type movements can be achieved in more than one way. Molecular dynamics simulations and experimental data help to understand how lipid bilayer properties may affect elevator movements and vice versa

Literatuurscan oorzaken geweld tegen kinderen en jongeren in afhankelijkheidsrelaties

Naar aanleiding van het rapport van de Commissie Seksueel misbruik van minderjarigen in de Rooms-Katholieke Kerk (Commissie Deetman), heeft de Minster van Veiligheid en Justitie, mede namens de Staatssecretaris van VWS, een onderzoek naar dieperliggende oorzaken van seksueel geweld en andere vormen van geweld in afhankelijkheidsrelaties toegezegd aan de Tweede Kamer. Dit onderzoek heeft betrekking op de eerste fase van het onderzoek. Het betreft een literatuurscan die de stand van de wetenschappelijke kennis op hoofdlijnen in kaart moet brengen met betrekking tot de etiologie van seksueel geweld en fysiek geweld tegen kinderen en jongeren, binnen afhankelijkheidsrelaties. De volgende deelvragen staan daarbij centraal: - Wat is de stand van de kennis over de etiologie van fysieke kindermishandeling en seksueel misbruik? - Waar liggen grofweg de mogelijkheden om te interveniëren? - Op welke thema's zou nader, al dan niet empirisch, onderzoek in Nederland wenselijk zijn en hoe zou dat er idealiter uitzien

A machine learning pipeline for supporting differentiation of glioblastomas from single brain metastases

Machine learning has provided, over the last decades, tools for knowledge extraction in complex medical domains. Most of these tools, though, are ad hoc solutions and lack the systematic approach that would be required to become mainstream in medical practice. In this brief paper, we define a machine learning-based analysis pipeline for helping in a difficult problem in the field of neuro-oncology, namely the discrimination of brain glioblastomas from single brain metastases. This pipeline involves source extraction using k-Meansinitialized Convex Non-negative Matrix Factorization and a collection of classifiers, including Logistic Regression, Linear Discriminant Analysis, AdaBoost, and Random Forests

Noninvasive Assessment of Exercise-Related Intramyocellular Acetylcarnitine in Euglycemia and Hyperglycemia in Patients With Type 1 Diabetes Using 1H Magnetic Resonance Spectroscopy: A randomized single-blind crossover study

Intramyocellular acetylcarnitine (IMAC) is involved in exercise-related fuel metabolism. It is not known whether levels of systemic glucose influence IMAC levels in type 1 diabetes

Combination of two fat saturation pulses improves detectability of glucose signals in carbon-13 MR spectroscopy

In order to improve the fat suppression performance of in vivo 13C-MRS operating at 3.0 Tesla, a phantom model study was conducted using a combination of two fat suppression techniques; a set of pulses for frequency (chemical shift) selective suppression (CHESS), and spatial saturation (SAT). By optimizing the slab thickness for SAT and the irradiation bandwidth for CHESS, the signals of the –13CH3 peak at 49 ppm and the –13CH2– peak at 26 ppm simulating fat components were suppressed to 5% and 19%, respectively. Combination of these two fat suppression pulses achieved a 53% increase of the height ratio of the glucose C1β peak compared with the sum of all other peaks, indicating better sensitivity for glucose signal detection. This method will be applicable for in vivo 13C-MRS by additional adjustment with the in vivo relaxation times of the metabolites

Highly potent bispecific sybodies neutralize SARS-CoV-2

The ongoing COVID-19 pandemic represents an unprecedented global health crisis. Here, we report the identification of a synthetic nanobody (sybody) pair (Sb#15 and Sb#68) that can bind simultaneously to the SARS-CoV-2 spike-RBD and efficiently neutralize pseudotyped and live-viruses by interfering with ACE2 interaction. Two spatially-discrete epitopes identified by cryo-EM translated into the rational design of bispecific and tri-bispecific fusions constructs, exhibiting up to 100- and 1000-fold increase in neutralization potency. Cryo-EM of the sybody-spike complex further revealed a novel up-out RBD conformation. While resistant viruses emerged rapidly in the presence of single binders, no escape variants were observed in presence of the bispecific sybody. The multivalent bispecific constructs further increased the neutralization potency against globally-circulating SARS-CoV-2 variants of concern. Our study illustrates the power of multivalency and biparatopic nanobody fusions for the development of clinically relevant therapeutic strategies that mitigate the emergence of new SARS-CoV-2 escape mutants

Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance

The ongoing COVID-19 pandemic represents an unprecedented global health crisis. Here, we report the identification of a synthetic nanobody (sybody) pair, Sb#15 and Sb#68, that can bind simultaneously to the SARS-CoV-2 spike RBD and efficiently neutralize pseudotyped and live viruses by interfering with ACE2 interaction. Cryo-EM confirms that Sb#15 and Sb#68 engage two spatially discrete epitopes, influencing rational design of bispecific and tri-bispecific fusion constructs that exhibit up to 100- and 1,000-fold increase in neutralization potency, respectively. Cryo-EM of the sybody-spike complex additionally reveals a novel up-out RBD conformation. While resistant viruses emerge rapidly in the presence of single binders, no escape variants are observed in the presence of the bispecific sybody. The multivalent bispecific constructs further increase the neutralization potency against globally circulating SARS-CoV-2 variants of concern. Our study illustrates the power of multivalency and biparatopic nanobody fusions for the potential development of therapeutic strategies that mitigate the emergence of new SARS-CoV-2 escape mutants

S. aureus MscL Is a Pentamer In Vivo but of Variable Stoichiometries In Vitro: Implications for Detergent-Solubilized Membrane Proteins

Detergent-induced rearrangements of membrane-protein subunits explain why two MscL channel stoichiometries have been resolved by X-ray crystallography - but S. aureus MscL is truly a pentamer in vivo

The terminal oxidases of Paracoccus denitrificans

Summary Three distinct types of terminal oxidases participate in the aerobic respiratory pathways of Paracoccus denitrificans. Two alternative genes encoding subunit i of the aaa-type cytochrome c oxidase have been isolated before, namely ctaDi and ctaDil. Each of these genes can be expressed separately to complement a double mutant (ActaDi, ActaDIl), indicating that they are isoforms of subunit i of the aas-type oxidase. The genomic locus of a quinol oxidase has been isoiated: cyoABC. This protohaem-containing oxidase, called cytochrome bb^, is the oniy quinoi oxidase expressed under the conditions used, in a tripie oxidase mutant (sctaDI, ActaDII, cyoS::Km") an aiternative cytochrome c oxidase has t>een characterized; this ebbstype oxidase has been partiaiiy purified. Both cytochrome ass and cytochrome b/>3 are redox-driven proton pumps. The proton-pumping capacity of cytochrome cbb^ has been analysed; arguments for and against the active transport of protons by this novel oxidase compiex are discussed