Supplementary Mathematica file_Immler&Otto

Mathematica file containing full models and approximations referred to in the manuscript

Model Analyses (PDF format)

A PDF print-out of the Mathematica 8.0 file

Model analyses

Mathematica 8.0 file in which we derive and analyze the model equations in the paper

SpermMotility

Number of total sperm and motile sperm recorded, 10 seconds post activation

Hatching

Numbers of offspring hatched / unhatched within any given clutch, measured in 2 hr time intervalsfrom 48 hours post fertilisation until 80 hours post fertilisation (or less, if all offspring had hatched prior to this point in time). File also contains information in MaleID, FemaleID, Treatment and experimental Block

EjaculateTraits

Ejaculate traits for each Male. Longevity: time of motility from activation until no longer motile (in seconds), 2 replicates per male. Density: sperm counts of visible field (2 per Male). Volume: Ejaculate volume (microliter) A: before setup of experiment, B: at IVF, C: 2 weeks after end of experiment

LarvalSurvival

Survival at 4 points (from 3h post fertilisation to 1 week of age). Reported are numbers of offspring alive / dead for each clutch

SpermVelocity

Sperm swimming speed parameters recorded (VCL, VAP, VSL) at 4 time points (10 / 20/30/40 seconds post activation)

Hough et al. (2013). SupMat - Jan14

Hough et al. (2013). SupMat - Jan1

Raw read for No evidence for MHC class II-based non-random mating at the gametic haplotype in Atlantic salmon

MiSeq platform (Illumina) raw reads as described in Promerová et al (2016). "No evidence for MHC class II-based non-random mating at the gametic haplotype in Atlantic salmon". The data file consists on a compressed file divided in 6 folders. Each folder (named e.g. lib1) contains reads from one sequencing lain. Inside there are individual fasta files with reads from one individual. Each individuals is coded (file name) with three codes separated by underscore: "sample code" + "family code" + "offspring code". Codes are listed in supplementary information in files "README.csv" including also used barre code for sample identification inside within libraries