Spatiotemporal Response of Crystals in X-ray Bragg Diffraction

The spatiotemporal response of crystals in x-ray Bragg diffraction resulting from excitation by an ultra-short, laterally confined x-ray pulse is studied theoretically. The theory presents an extension of the analysis in symmetric reflection geometry [1] to the generic case, which includes Bragg diffraction both in reflection (Bragg) and transmission (Laue) asymmetric scattering geometries. The spatiotemporal response is presented as a product of a crystal-intrinsic plane wave spatiotemporal response function and an envelope function defined by the crystal-independent transverse profile of the incident beam and the scattering geometry. The diffracted wavefields exhibit amplitude modulation perpendicular to the propagation direction due to both angular dispersion and the dispersion due to Bragg's law. The characteristic measure of the spatiotemporal response is expressed in terms of a few parameters: the extinction length, crystal thickness, Bragg angle, asymmetry angle, and the speed of light. Applications to self-seeding of hard x-ray free electron lasers are discussed, with particular emphasis on the relative advantages of using either the Bragg or Laue scattering geometries. Intensity front inclination in asymmetric diffraction can be used to make snapshots of ultra-fast processes with femtosecond resolution

Hard Real Time Quick Exafs Data Acquisition With All Open Source Software on a Commodity Personal Computer.

We describe here the data acquisition subsystem of the Quick EXAFS (QEXAFS) experiment at the National Synchrotron Light Source of Brookhaven National Laboratory. For ease of future growth and flexibility, almost all software components are open source with very active maintainers. Among them, Linux running on x86 desktop computer, RTAI for real-time response, COMEDI driver for the data acquisition hardware, Qt and PyQt for graphical user interface, PyQwt for plotting, and Python for scripting. The signal (A/D) and energy-reading (IK220 encoder) devices in the PCI computer are also EPICS enabled. The control system scans the monochromator energy through a networked EPICS motor. With the real-time kernel, the system is capable of deterministic data-sampling period of tens of micro-seconds with typical timing-jitter of several micro-seconds. At the same time, Linux is running in other non-real-time processes handling the user-interface. A modern Qt-based controls-front end enhances productivity. The fast plotting and zooming of data in time or energy coordinates let the experimenters verify the quality of the data before detailed analysis. Python scripting is built-in for automation. The typical data-rate for continuous runs are around ten mega-bytes per minute

Microtomography with 3-D visualization

The facility has been developed for producing high quality tomographs of order one micrometer resolution. Three dimensional volumes derived from groups of adjacent tomographic slices are then viewed and navigated in a stereographic viewing facility. This facility is being applied to problems in geological evaluation of oil reservoir rock, medical imaging, protein chemistry, and CADCAM

A High-Speed Detector System for X-ray Fluorescence Microprobes.

We have developed a high-speed system for collecting x-ray fluorescence microprobe data, based on ASICs developed at BNL and high-speed processors developed by CSIRO. The system can collect fluorescence data in a continuous raster scan mode, and present elemental images in real time using Ryan's Dynamic Analysis algorithm. We will present results from a 32-element prototype array illustrating the concept. The final instrument will have 384 elements arranged in a square array around a central hole

X-Ray Active Matrix Pixel Sensors Basedon J-FET Technology Developed for the Linac Coherent Light Source.

An X-ray Active Matrix Pixel Sensor (XAMPS) is being developed for recording data for the X-ray Pump Probe experiment at the Linac Coherent Light Source (LCLS). Special attention has to be paid to some technological challenges that this design presents. New processes were developed and refined to address problems encountered during previous productions of XAMPS. The development of these critical steps and corresponding tests results are reported here

Warmer temperatures reduce the vectorial capacity of malaria mosquitoes

The development rate of parasites and pathogens within vectors typically increases with temperature. Accordingly, transmission intensity is generally assumed to be higher under warmer conditions. However, development is only one component of parasite/pathogen life history and there has been little research exploring the temperature sensitivity of other traits that contribute to transmission intensity. Here, using a rodent malaria, we show that vector competence (the maximum proportion of infectious mosquitoes, which implicitly includes parasite survival across the incubation period) tails off at higher temperatures, even though parasite development rate increases. We also show that the standard measure of the parasite incubation period (i.e. time until the first mosquitoes within a cohort become infectious following an infected blood-meal) is incomplete because parasite development follows a cumulative distribution, which itself varies with temperature. Including these effects in a simple model dramatically alters estimates of transmission intensity and reduces the optimum temperature for transmission. These results highlight the need to understand the interactive effects of environmental temperature on multiple host-disease life-history traits and challenge the assumptions of many current disease models that ignore this complexity

Large detector array and real-time processing and elemental image projection of X-ray and proton microprobe fluorescence data

Abstract A detector concept is described that integrates a large solid-angle detector array developed at Brookhaven National Laboratory and a high speed pipelined parallel processing engine developed at CSIRO for machine vision, with an embedded implementation of the Dynamic Analysis method for fluorescence spectra deconvolution and image projection, to yield a detection system capable of energydispersive detection, spectral deconvolution and real-time elemental imaging at $10 8 events per second for PIXE elemental imaging using the nuclear microprobe and SXRF elemental imaging using the synchrotron X-ray microprobe