Parameter estimation for a mechanistic model of high dose irradiation damage using Nelder-Mead simplex method and genetic algorithm

Radiation therapy is one of the cancer cells treatments that use high-energy radiation to shrink tumors and kill cancer cells. Radiation therapy kills cancer cells by damaging their DNA directly or creates charged particles within the cells that can in turn damage the DNA. As a side effect of the treatment, the radiation therapy can also damage the normal cell that located at parts of our body. The main goals of radiation therapy are to maximize the damaging of tumors cell and minimize the damage of normal tissue cell. Hence, in this study, we adopt an existing model of high dose irradiation damage. The purpose of this study is to estimate the six parameters of the model which are involved. Two optimization algorithms are used in order to estimate the parameters: Nelder-Mead (NM) simplex method and Genetic Algorithm (GA). Both methods have to achieve the objective function which is to minimize the sum of square error (SSE) between the experimental data and the simulation data. The performances of both algorithms are compared based on the computational time, number of iteration and value of sum of square error. The optimization process is carried out using MATLAB programming built-in functions. The parameters estimation results shown that Nelder-Mead simplex method is more superior compare to Genetic Algorithm for this problem

Mechanical properties of 10-year-old sentang (Azadirachta excelsa) grown from vegetative propagation

Mechanical properties of 10-year-old sentang (Azadirachta excelsa) grown from vegetative propagation. This paper reports the mechanical properties of sentang (Azadirachta excelsa) wood cut from trees that were planted by vegetative propagation, their variations along tree height and also between sapwood and heartwood. The correlation between selected anatomical properties as well as density and mechanical properties were also presented. There was no significant difference in modulus of rupture between wood from seedling and rooted- cutting trees. However, wood from rooted-cutting trees showed higher modulus of elasticity compared with wood from seedling trees. On the other hand, compression and shear parallel to the grain were significantly higher in wood planted from seedling compared with wood from rooted-cutting trees. There was an increase in mechanical properties at the bottom portion towards the top irrespective of the planting technique. Mechanical properties were higher in heartwood than in sapwood. Mechanical properties were correlated with anatomical properties rather than density. Rooted cutting could be a promising method for planting sentang, apart from seedling

Transcriptome, Proteome, and Protein Synthesis Within the Intracellular Cytomatrix

Despite the knowledge that protein translation and various metabolic reactions that create and sustain cellular life occur in the cytoplasm, the structural organization within the cytoplasm remains unclear. Recent models indicate that cytoplasm contains viscous fluid and elastic solid phases. We separated these viscous fluid and solid elastic compartments, which we call the cytosol and cytomatrix, respectively. The distinctive composition of the cytomatrix included structural proteins, ribosomes, and metabolome enzymes. High-throughput analysis revealed unique biosynthetic pathways within the cytomatrix. Enrichment of biosynthetic pathways in the cytomatrix indicated the presence of immobilized biocatalysis. Enzymatic immobilization and segregation can surmount spatial impediments, and the local pathway segregation may form cytoplasmic organelles. Protein translation was reprogrammed within the cytomatrix under the restriction of protein synthesis by drug treatment. The cytosol and cytomatrix are an elaborately interconnected network that promotes operational flexibility in healthy cells and the survival of malignant cells

Comparative leaf anatomy and micromorphology of thunbergia erecta (benth.) t. anderson and thunbergia laurifolia lindl. in peninsular Malaysia

Comparative leaf anatomy and micromorphology study was carried out on two selected species from the genus Thunbergia Retz. of Acanthaceae subfamily Thunbergioideae. These two investigated species were T. erecta and T. laurifolia from Peninsular Malaysia. The leaf anatomical study involve several methods such as cross- section using sliding microtome on the petioles, midribs, lamina and marginal, leaf epidermal peeling, leaf clearing and observation under a light microscope. The leaf micromorphology method involve the observation under a scanning electron microscope (SEM). This study aimed to investigate the taxonomic value of leaf anatomy and micromorphology characteristics of genus Thunbergia. The results have shown that there were five common characteristics present in both species studied and several variable characters that might be useful for species differentiation of T. erecta and T. laurifolia. The five common characteristics recorded were the presence of raphide, sinuous anticlinal walls, diacytic stomata, majority opened and minority closed venation in lamina and the presence of peltate glandular (unicellular terminal) trichome. The variable characteristics included were petiole, and marginal outlines, types of vascular bundles, the presence of druse, marginal venation, stomata occurrence, types of wax, cuticular sculpturing and types of trichomes. In conclusion, findings in this study showed that leaf anatomical micromorphological characteristics possessed taxonomic value that can be used in the species identification for the genus Thunbergia specifically for T. erecta and T. laurifolia

The clinical features and outcomes of acute liver failure associated with dengue infection in adults: a case series

OBJECTIVE: To describe the clinical manifestations and outcome of acute liver failure (ALF) associated with dengue viral infection, a rare but severe complication. METHODS: One hundred and fifty five consecutive patients with ALF admitted to the national liver centre from 2001 to 2009 were reviewed retrospectively. Eight cases due to dengue infection were identified and their clinical characteristics are described. RESULTS: All patients had severe dengue with one dengue shock syndrome. The median (minimum, maximum) age was 33.5 (17, 47) years with 50% female. The median (minimum, maximum) duration from the onset of fever to development of ALF was 7.5 (5, 13) days and the maximum hepatic encephalopathy (HE) grade were III in five patients and II in three patients. Three patients had systemic inflammatory responses (SIRS) on admission and were in grade III HE. The presence of SIRS on admission was associated with higher grade of HE and its development during the course of hospitalization was associated with worsening HE grade. The hepatitis was characterized by marked elevations in: alanine transaminase [median admission 1140.5 u/L (639, 4161); median peak 2487 u/L (998, 5181)], serum bilirubin [median admission 29 µmol/L (23, 291); median peak 127 µmol/L (72, 592)], and prothrombin time [median admission 16.8 s (15.3, 26.2); median peak 22 s (15.3, 40.7)]. The survival rate with standard medical therapy alone was 100%. CONCLUSIONS: Dengue associated ALF manifest about one week after the onset of fever with severe hepatitis and encephalopathy. In our experience, the outcome with standard medical therapy alone is excellent

Taxonomic implications of pollen of some species of the genus Pterospermum Schreb. (Malvaceae s.l. subfam. Dombeyoideae)

A palynological study of six species of Pterospermum was conducted to investigate variation in pollen micromorphological characteristics. The studied species were P. diversifolium, P. elongatum, P. jackianum, P. javanicum, P. lanceifolium and P. subpeltatum. Pollen was subjected to acetolysis, single-grain techniques and dehydration series, and observed using light and scanning electron microscopy. The results reveal some common characters shared by all the studied species, namely: echinate-granulate exine ornamentation; porate pollen class; and circular amb. Variation was found in the ratio of exine thickness, pollen size, and average spine length, outline, shape, measurements, spine size and the presence of an annulus. These characters proved to be valuable for identifying and differentiating the studied species. This study shows that morphological characteristics of Pterospermum pollen have taxonomic value, especially for the identification and differentiation of species of the subfamily Dombeyoideae and even other Malvaceae s.l

Taxonomic implications of pollen of some species of the genus Pterospermum Schreb. (Malvaceae s.l. subfam. Dombeyoideae)

A palynological study of six species of Pterospermum was conducted to investigate variation in pollen micromorphological characteristics. The studied species were P. diversifolium, P. elongatum, P. jackianum, P. javanicum, P. lanceifolium and P. subpeltatum. Pollen was subjected to acetolysis, single-grain techniques and dehydration series, and observed using light and scanning electron microscopy. The results reveal some common characters shared by all the studied species, namely: echinate-granulate exine ornamentation; porate pollen class; and circular amb. Variation was found in the ratio of exine thickness, pollen size, and average spine length, outline, shape, measurements, spine size and the presence of an annulus. These characters proved to be valuable for identifying and differentiating the studied species. This study shows that morphological characteristics of Pterospermum pollen have taxonomic value, especially for the identification and differentiation of species of the subfamily Dombeyoideae and even other Malvaceae s.l

Dawn-to-dusk dry fasting decreases circulating inflammatory cytokines in subjects with increased body mass index

Background: The circadian rhythm involves numerous metabolic processes, including sleep/awakening, body temperature regulation, hormone secretion, hepatic function, cellular plasticity, and cytokine release (inflammation), that appear to have a dynamic relationship with all the processes above. Studies have linked various cytokines to the chronic state of low-grade inflammation and oxidative stress in obesity. Dawn-to-dusk dry fasting (DDDF) could alleviate the adverse effects of obesity by decreasing inflammation. This study examined the effects of DDDF on circulating inflammatory cytokines in subjects with increased body mass index (BMI). Methods: The current observational prospective study included adult subjects with a BMI equal to or greater than 25 kg/m2 who practiced the annual religious 30-day DDDF. Individuals with significant underlying medical conditions were excluded to limit confounding factors. All subjects were evaluated within two weeks before 30-day DDDF, within the fourth week of 30-day DDDF, and within two weeks after 30-day DDDF. Multiple cytokines and clinical health indicators were measured at each evaluation. Results: Thirteen subjects (10 men and three women) with a mean age of 32.9 years (SD = 9.7 years) and a mean BMI of 32 kg/m2 (SD = 4.6 kg/m2) were included. An overall associated decrease in the levels of multiple cytokines with DDDF was observed. A significant decrease in the mean interleukin 1 beta level was observed within the fourth week of 30-day DDDF (P = 0.045), which persisted even after the fasting period (P = 0.024). There was also a significant decrease in the mean levels of interleukin 15 (IL-15) (P = 0.014), interleukin 1 receptor antagonist (P = 0.041), macrophage-derived chemokine (MDC) (P = 0.013), and monokine induced by interferon gamma/chemokine (C-X-C motif) ligand 9 (P = 0.027) within the fourth week of 30-day DDDF and in the mean levels of fibroblast growth factor 2 (P = 0.010), interleukin 12 p40 subunit (P = 0.038), interleukin 22 (P = 0.025) and tumor necrosis factor alpha (P = 0.046) within two weeks after 30-DDDF. In terms of anthropometric parameters, there was a decrease in mean body weight (P = 0.032), BMI (P = 0.028), and hip circumference (P = 0.007) within the fourth week of 30-day DDDF and a decrease in mean weight (P = 0.026), BMI (P = 0.033) and hip circumference (P = 0.016) within two weeks after 30-day DDDF compared with the levels measured within two weeks before 30-day DDDF. Although there was no significant correlation between changes in weight and changes in circulating inflammatory cytokines, there was a significant positive correlation between changes in waist circumference and changes in specific inflammatory cytokines (e.g., IL-15, MDC, platelet-derived growth factor, soluble CD40L, vascular endothelial growth factor A) within the fourth week of 30-day DDDF and/or two weeks after 30-day DDDF. A significant decrease in mean average resting heart rate within the fourth week of 30-day DDDF was also observed (P = 0.023), and changes between average resting heart rate and changes in interleukin-8 levels within the fourth week of 30-day DDDF compared with baseline levels were positively correlated (r = 0.57, P = 0.042). Conclusion: DDDF appears to be a unique and potent treatment to reduce low-grade chronic inflammation caused by obesity and visceral adiposity. Further studies with more extended follow-up periods are warranted to investigate the long-term anti-inflammatory benefits of DDDF in individuals with increased BMI