Important soil microbiota's effects on plants and soils: a comprehensive 30-year systematic literature review

Clarifying the relationship between soil microorganisms and the plant-soil system is crucial for encouraging the sustainable development of ecosystems, as soil microorganisms serve a variety of functional roles in the plant-soil system. In this work, the influence mechanisms of significant soil microbial groups on the plant-soil system and their applications in environmental remediation over the previous 30 years were reviewed using a systematic literature review (SLR) methodology. The findings demonstrated that: (1) There has been a general upward trend in the number of publications on significant microorganisms, including bacteria, fungi, and archaea. (2) Bacteria and fungi influence soil development and plant growth through organic matter decomposition, nitrogen, phosphorus, and potassium element dissolution, symbiotic relationships, plant growth hormone production, pathogen inhibition, and plant resistance induction. Archaea aid in the growth of plants by breaking down low-molecular-weight organic matter, participating in element cycles, producing plant growth hormones, and suppressing infections. (3) Microorganism principles are utilized in soil remediation, biofertilizer production, denitrification, and phosphorus removal, effectively reducing environmental pollution, preventing soil pathogen invasion, protecting vegetation health, and promoting plant growth. The three important microbial groups collectively regulate the plant-soil ecosystem and help maintain its relative stability. This work systematically summarizes the principles of important microbial groups influence plant-soil systems, providing a theoretical reference for how to control soil microbes in order to restore damaged ecosystems and enhance ecosystem resilience in the future

Effect of Cultivated Pastures on Soil Bacterial Communities in the Karst Rocky Desertification Area

Soil bacteria play an important role in regulating the process of vegetation restoration in karst ecosystems. However, the effects of vegetation restoration for different cultivated pastures on soil bacterial communities in the karst rocky desertification regions remain unclear. Therefore, we hypothesized that mixed pasture is the most effective for soil bacterial communities among different vegetation restorations. In this study, we systematically studied the soil properties and soil bacterial communities in four vegetation restoration modes [i.e., Dactylis glomerata pasture (DG), Lolium perenne pasture (LP), Lolium perenne + Trifolium repens mixed pasture (LT), and natural grassland (NG)] by using 16S rDNA Illumina sequencing, combined with six soil indicators and data models. We found that the vegetation restoration of cultivated pastures can improve the soil nutrient content compared with the natural grassland, especially LT treatment. LT treatment significantly increased the MBC content and Shannon index. The vegetation restoration of cultivated pastures significantly increased the relative abundance of Proteobacteria, but LT treatment significantly decreased the relative abundance of Acidobacteria. Soil pH and MBC significantly correlated with the alpha diversity of soil bacterial. Soil pH and SOC were the main factors that can affect the soil bacterial community. FAPROTAX analysis showed LT treatment significantly decreased the relative abundance of aerobic chemoheterotrophs. The results showed that the bacterial communities were highly beneficial to soil restoration in the LT treatment, and it confirmed our hypothesis. This finding provides a scientific reference for the restoration of degraded ecosystems in karst rocky desertification areas

Responses of soil microbial biomass, microbial entropy and soil-microorganism stoichiometry imbalance to different utilization patterns in the artificial grassland of karst desertification area

Different utilization patterns can alter the C, N, P cycles and their ecological stoichiometry characteristics in grassland soils. However, the effects of different utilization patterns on soil microbial biomass, microbial entropy and soil-microorganism stoichiometry imbalance of artificial grassland are not clear. So this study was took different utilization patterns of artificial grassland [i.e., grazing grassland (GG), mowing grassland (MG), enclosed grassland (EG)] as the research object to investigate responses of soil microbial biomass, microbial entropy and soil-microorganism stoichiometry imbalance to different utilization patterns in the karst rocky desertification control area. We found that the contents of microbial biomass carbon (MBC) and microbial biomass nitrogen (MBN) were highest in GG, and the content of microbial biomass phosphorus (MBP) was highest in EG. Soil microbial biomass entropy carbon (qMBC) and soil microbial biomass entropy nitrogen (qMBN) of GG and MG were higher than those of EG, but soil microbial biomass entropy phosphorus (qMBP) was opposite. C:N stoichiometry imbalance (C:Nimb) was EG > GG > MG, C:P stoichiometry imbalance (C:Pimb) was EG > MG > GG, N:P stoichiometry imbalance (N:Pimb) was MG > EG > GG. MBN was significantly positive correlated with C:Nimb and C:Pimb, MBC was significantly negative correlated with C:Pimb, MBP was significantly negative correlated with N:Pimb. The redundancy analysis (RDA) results showed that N:Pimb (p = 0.014), C:Nimb (p = 0.014), and C:P in the soil (C:Psoil, p = 0.028) had the most significant effect on microbial entropy. EG had a significant effect on soil microbial biomass and microbial entropy. The results of this study can directly or indirectly reflect the grassland soil quality under different utilization patterns in the karst rocky desertification area, which has a certain reference value for the degraded ecosystem restoration

Role of A20 in cIAP-2 Protection against Tumor Necrosis Factor α (TNF-α)-Mediated Apoptosis in Endothelial Cells

Tumor necrosis factor α (TNF-α) influences endothelial cell viability by altering the regulatory molecules involved in induction or suppression of apoptosis. However, the underlying mechanisms are still not completely understood. In this study, we demonstrated that A20 (also known as TNFAIP3, tumor necrosis factor α-induced protein 3, and an anti-apoptotic protein) regulates the inhibitor of apoptosis protein-2 (cIAP-2) expression upon TNF-α induction in endothelial cells. Inhibition of A20 expression by its siRNA resulted in attenuating expression of TNF-α-induced cIAP-2, yet not cIAP-1 or XIAP. A20-induced cIAP-2 expression can be blocked by the inhibition of phosphatidyl inositol-3 kinase (PI3-K), but not nuclear factor (NF)-κB, while concomitantly increasing the number of endothelial apoptotic cells and caspase 3 activation. Moreover, TNF-α-mediated induction of apoptosis was enhanced by A20 inhibition, which could be rescued by cIAP-2. Taken together, these results identify A20 as a cytoprotective factor involved in cIAP-2 inhibitory pathway of TNF-α-induced apoptosis. This is consistent with the idea that endothelial cell viability is dependent on interactions between inducers and suppressors of apoptosis, susceptible to modulation by TNF-α

Particle triggered reactions as an important mechanism of alkalinity and inorganic carbon removal in river plumes

Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 48(11), (2021): e2021GL093178, https://doi.org/10.1029/2021GL093178.The effects of heterogeneous reactions between river-borne particles and the carbonate system were studied in the plumes of the Mississippi and Brazos rivers. Measurements within these plumes revealed significant removal of dissolved inorganic carbon (DIC) and total alkalinity (TA). After accounting for all known DIC and TA sinks and sources, heterogeneous reactions (i.e., heterogeneous CaCO3 precipitation and cation exchange between adsorbed and dissolved ions) were found to be responsible for a significant fraction of DIC and TA removal, exceeding 10% and 90%, respectively, in the Mississippi and Brazos plume waters. This finding was corroborated by laboratory experiments, in which the seeding of seawater with the riverine particles induced the removal of the DIC and TA. The combined results demonstrate that heterogeneous reactions may represent an important controlling mechanism of the seawater carbonate system in particle-rich coastal areas and may significantly impact the coastal carbon cycle.This research was funded by the National Science Foundation (NSF) and the Bi-National Science Foundation U.S-Israel award number OCE-BSF 1635388.2021-11-2

Updating systematic reviews can improve the precision of outcomes: a comparative study

Objectives: The objective of this study was to investigate the main characteristics and the precision of outcomes between updated and original systematic reviews (SRs). Study Design and Setting: We searched PubMed and Embase.com on 31 March 2019 and included 30 pairs of updated and original SRs. We calculated changes in outcomes and the precision of effect size estimates in updated SRs, compared with original SRs. Review Manager 5.3 software was adopted to create forest plots showing comparable outcomes. Results: The average update time was 56.0 months, and incorporating new trials (23 SRs, 76.7%) was the main reason for the update. Compared with original SRs, 24 (80.0%) updated SRs included more randomized controlled trials and 22 (73.3%) updated SRs involved a larger number of patients. Of the 130 comparable outcomes, only three (2.3%) outcomes were observed with a significant change in three SR updates. No new data from randomized controlled trials were added to 36 (27.7%) outcomes during the update process. Of the 94 outcomes including new evidence, 83 (88.3%) showed an improvement in precision, 5 (5.3%) showed a decrease in precision, and 6 (6.4%) did not exhibit changes in precision. Conclusion: Updating SRs could increase the precision of most comparable outcomes, although the conclusions of almost all updated SRs were similar to original SRs

Methodological and reporting quality in non-Cochrane systematic review updates could be improved: a comparative study

Objectives: To compare the methodological and reporting quality of updated systematic reviews (SRs) and original SRs. Study Design and Setting: We included 30 pairs of non-Cochrane updated and original SRs, identified from a search of PubMed and Embase.com. We used AMSTAR 2 to assess methodological quality and PRISMA for reporting quality. Stratified analyses were conducted to compare the differences between updated SRs and original SRs and explore factors that might affect the degree of quality change. Results: Of the 60 non-Cochrane SRs, only 2 (3.3%) were of low quality, the remaining 58 (96.7%) were of critical low quality. There were no statistically significant differences in methodological quality between the updated SRs and original SRs, although the compliance rates of 8 items of updated SRs were higher than that of original SRs. Updated SRs showed an improvement on 15 PRISMA items, but no items with statistically significant differences. The differences in fully reported AMSTAR 2 and PRISMA items between original SRs and updated SRs were also not statistically significant after adjusting for multiple review characteristics. Conclusions: The methodological and reporting quality of updated SRs were not improved compared with original SRs, although the quality could be further improved for both updated SRs and original SRs

Exacerbation of hepatitis C induced subclinical hypoadrenalism by Interferon-alpha2beta: A case report

Adrenal disease is an uncommon manifestation of hepatitis C infection and its related treatment regimen. This is a case of subclinical hypoadrenalism, probably induced by hepatitis C infection and further exacerbated by interferon-α2β and Ribavirin therapy. The adrenal deterioration during the treatment course was observed closely with 24-hour salivary profiles and 250 μg adrenocorticotropin stimulation tests using parallel serum and salivary cortisol concentrations. A number of possible pathogenic mechanisms are discussed, and the controversy over its management is emphasized