Nonlinear internal waves over New Jersey's continental shelf

Author Posting. © American Geophysical Union, 2011. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 116 (2011): C03022, doi:10.1029/2010JC006332.Ship and mooring data collected off the coast of New Jersey are used to describe the nonlinear internal wave (NLIW) field and the background oceanographic conditions that formed the waveguide on the shelf. The subinertial, inertial, and tidal circulation are described in detail, and the background fluid state is characterized using the coefficients of the extended Korteweg–de Vries equation. The utility of this type of analysis is demonstrated in description of an amplitude-limited, flat wave. NLIWs observed over most of the month had typical displacements of −8 m, but waves observed from 17–21 August were almost twice as large with displacements near −15 m. During most of the month, wave packets occurred irregularly at a fixed location, and often more than one packet was observed per M2 tidal period. In contrast, the arrival times of the large-amplitude wave groups observed over 17–21 August were more closely phased with the barotropic tide. The time span in which the largest NLIWs were observed corresponded to neap barotropic conditions, but when the shoreward baroclinic energy flux was elevated. During the time of large NLIWs, near-inertial waves were a dominate contributor to the internal motions on the shelf and apparently regulated wave formation, as destructive/constructive modulation of the M2 internal tide by the inertial wavefield at the shelf break corresponded to stronger/weaker NLIWs on the shelf.This work was funded by the Office of Naval Research

Ablation of neuropilin 1 from glioma-associated microglia and macrophages slows tumor progression

Gliomas are the most commonly diagnosed primary tumors of the central nervous system (CNS). Median times of survival are dismal regardless of the treatment approach, underlying the need to develop more effective therapies. Modulation of the immune system is a promising strategy as innate and adaptive immunity play important roles in cancer progression. Glioma associated microglia and macrophages (GAMs) can comprise over 30% of the cells in glioma biopsies. Gliomas secrete cytokines that suppress the anti-tumorigenic properties of GAMs, causing them to secrete factors that support the tumor's spread and growth. Neuropilin 1 (Nrp1) is a transmembrane receptor that in mice both amplifies pro-angiogenic signaling in the tumor microenvironment and affects behavior of innate immune cells. Using a Cre-lox system, we generated mice that lack expression of Nrp1 in GAMs. We demonstrate, using an in vivo orthotopic glioma model, that tumors in mice with Nrp1-deficient GAMs exhibit less vascularity, grow at a slower pace, and are populated by increased numbers of anti-tumorigenic GAMs. Moreover, glioma survival times in mice with Nrp1-deficient GAMs were significantly longer. Treating wild-type mice with a small molecule inhibitor of Nrp1's b1 domain, EG00229, which we show here is selective for Nrp1 over Nrp2, yielded an identical outcome. Nrp1-deficient or EG00229-treated wild-type microglia exhibited a shift towards anti-tumorigenicity as evident by altered inflammatory marker profiles in vivo and decreased SMAD2/3 activation when conditioned in the presence of glioma-derived factors. These results provide support for the proposal that pharmacological inhibition of Nrp1 constitutes a potential strategy for suppressing glioma progression

Distinct Frontal Ablation Processes Drive Heterogeneous Submarine Terminus Morphology

An edited version of this paper was published by AGU. Copyright 2019 American Geophysical Union.Calving and submarine melt drive frontal ablation and sculpt the ice face of marine‐terminating glaciers. However, there are sparse observations of submarine termini, which limit estimates of spatially varying submarine melt. Here we present a detailed survey of a west Greenland glacier to reveal heterogeneity in submarine terminus morphology. We find that the majority of the terminus (~77%) is undercut, driven by calving in the upper water column and submarine melting at depth. The remaining ~23% of the terminus is overcut, driven by calving alone. We use observations of six subglacial discharge outlets, combined with a plume model, to estimate spatially varying discharge fluxes. While small discharge fluxes (<43 m3/s) feed numerous, deeply undercut outlets with subsurface plumes, ~70% of the net subglacial flux emerges at the terminus center, producing a vigorous, surface‐reaching plume. This primary outlet drives large, localized seasonal retreat that exceeds calving rates at secondary outlets

Low intensity vibration mitigates tumor progression and protects bone quantity and quality in a murine model of myeloma

Myeloma facilitates destruction of bone and marrow. Since physical activity encourages musculoskeletal preservation we evaluated whether low-intensity vibrations (LIV), a component of mechanical signaling, could protect bone and marrow during myeloma progression. Immunocompromised-mice (n=25) were injected with human-myeloma cells, while 8 (AC) were saline-injected. Myeloma-injected mice (LIV; n=13) were subjected to daily-mechanical loading (15min/d; 0.3g @ 90Hz) while 12 (MM) were sham-handled. At 8w, femurs had 85% less trabecular bone volume (BV) fraction in MM versus AC, yet only a 21% decrease in LIV as compared to as compared to AC, reflecting a 76% increase versus MM. Cortical BV was 21% and 15% lower in MM and LIV, respectively, than AC; LIV showing 30% improvement over MM. Similar outcomes were observed in the axial skeleton, showing a 35% loss in MM with a 27% improved retention of bone in L5 of LIV-treated mice as compared to MM. Transcortical-perforations in the femur from myeloma-induced osteolysis were 9× higher in MM versus AC, reduced by 57% in LIV. Serum-TRACP5b, 61% greater in MM versus AC, rose by 33% in LIV compared to AC, a 45% reduction in activity when compared to MM. Histomorphometric analyses of trabecular bone demonstrated a 70% elevation in eroded surfaces of MM versus AC, while measures in LIV were 58% below those in MM. 72% of marrow in the femur of MM mice contained tumor, contrasted by a 31% lower burden in LIV. MM mice (42%) presented advanced-stage necrosis of marrow in the tibia while present in just 8% of LIV. Myeloma infiltration inversely correlated to measures of bone quality, while LIV slowed systemic myeloma-associated decline in bone quality and inhibited tumor progression through the hindlimbs

Vertical heat flux and lateral mass transport in nonlinear internal waves

Author Posting. © American Geophysical Union, 2010. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 37 (2010): L08601, doi:10.1029/2010GL042715.Comprehensive observations of velocity, density, and turbulent dissipation permit quantification of the nonlinear internal wave (NLIW) contribution to vertical heat flux and lateral mass transport over New Jersey's shelf. The effect of NLIWs on the shelf heat budget was significant. On average, heat flux in NLIWs was 10 times larger than background at the pycnocline depth. NLIWs were present at midshelf <10% of the time, yet we estimate that they contributed roughly one−half the heat flux across the pycnocline during the observation period, which was characterized by weak to moderate winds. Lateral transport distances due to the leading 3 waves in NLIW packets were typically inline equation(100 m) but ranged several kilometers. The month-averaged daily onshore transport (per unit alongshelf dimension) by NLIWs is estimated as 0.3 m2s−1. This is comparable to a weak downwelling wind, but sustained over an entire month.This work was funded by the Office of Naval Research

Sigma viruses from three species of Drosophila form a major new clade in the rhabdovirus phylogeny

The sigma virus (DMelSV), which is a natural pathogen of Drosophila melanogaster, is the only Drosophila-specific rhabdovirus that has been described. We have discovered two new rhabdoviruses, D. obscura and D. affinis, which we have named DObsSV and DAffSV, respectively. We sequenced the complete genomes of DObsSV and DMelSV, and the L gene from DAffSV. Combining these data with sequences from a wide range of other rhabdoviruses, we found that the three sigma viruses form a distinct clade which is a sister group to the Dimarhabdovirus supergroup, and the high levels of divergence between these viruses suggest that they deserve to be recognized as a new genus. Furthermore, our analysis produced the most robustly supported phylogeny of the Rhabdoviridae to date, allowing us to reconstruct the major transitions that have occurred during the evolution of the family. Our data suggest that the bias towards research into plants and vertebrates means that much of the diversity of rhabdoviruses has been missed, and rhabdoviruses may be common pathogens of insects

Distributed subglacial discharge drives significant submarine melt at a Greenland tidewater glacier

Submarine melt can account for substantial mass loss at tidewater glacier termini. However, the processes controlling submarine melt are poorly understood due to limited observations of submarine termini. Here at a tidewater glacier in central West Greenland, we identify subglacial discharge outlets and infer submarine melt across the terminus using direct observations of the submarine terminus face. We find extensive melting associated with small discharge outlets. While the majority of discharge is routed to a single, large channel, outlets not fed by large tributaries drive submarine melt rates in excess of 3.0 m d−1 and account for 85% of total estimated melt across the terminus. Nearly the entire terminus is undercut, which may intersect surface crevasses and promote calving. Severe undercutting constricts buoyant outflow plumes and may amplify melt. The observed morphology and melt distribution motivate more realistic treatments of terminus shape and subglacial discharge in submarine melt models

Mode 2 waves on the continental shelf : ephemeral components of the nonlinear internal wavefield

Shoreward propagating, mode 2 nonlinear waves appear sporadically in mooring records obtained off the coast of New Jersey in the summer of 2006. Individual mode 2 packets were tracked between two moorings separated by 1 km; however, packets could not be tracked between moorings separated by greater distances from one another (∼10 km). The inability to track individual packets large distances through the mooring array combined with detailed observations from a ship suggest that these waves are short lived. The evolution of the ship‐tracked wave group was recorded using acoustic backscatter, acoustic Doppler current profilers, and turbulence profiling. The leading mode 2 wave quickly changed form and developed a tail of short, small‐amplitude mode 1 waves. The wavelength of the mode 1 oscillations agreed with that expected for a copropagating tail on the basis of linear theory. Turbulent dissipation in the mixed layer and radiation of the short mode 1 waves contributed to rapid energy loss in the leading mode 2 wave, consistent with the observed decay rate and short life span of only a few hours. The energy in the leading mode 2 wave was 10–100 times smaller than the energy of mode 1 nonlinear internal waves observed during the experiment; however, the magnitudes of wave‐localized turbulent dissipation were similar