Dynamic analysis of a needle insertion for soft materials: Arbitrary Lagrangian-Eulerian-based three-dimensional finite element analysis

Background: Our goal was to develop a three-dimensional finite element model that enables dynamic analysis of needle insertion for soft materials. To demonstrate large deformation and fracture, we used the arbitrary Lagrangian-Eulerian (ALE) method for fluid analysis. We performed ALE-based finite element analysis for 3% agar gel and three types of copper needle with bevel tips. Methods: To evaluate simulation results, we compared the needle deflection and insertion force with corresponding experimental results acquired with a uniaxial manipulator. We studied the shear stress distribution of agar gel on various time scales. Results: For 30°, 45°, and 60°, differences in deflections of each needle between both sets of results were 2.424, 2.981, and 3.737. mm, respectively. For the insertion force, there was no significant difference for mismatching area error (p<0.05) between simulation and experimental results. Conclusions: Our results have the potential to be a stepping stone to develop pre-operative surgical planning to estimate an optimal needle insertion path for MR image-guided microwave coagulation therapy and for analyzing large deformation and fracture in biological tissues. © 2014 Elsevier Ltd.Yamaguchi S., Tsutsui K., Satake K., et al. Dynamic analysis of a needle insertion for soft materials: Arbitrary Lagrangian-Eulerian-based three-dimensional finite element analysis. Computers in Biology and Medicine 53, 42 (2014); https://doi.org/10.1016/j.compbiomed.2014.07.012

Architectures of archaeal GINS complexes, essential DNA replication initiation factors

<p>Abstract</p> <p>Background</p> <p>In the early stage of eukaryotic DNA replication, the template DNA is unwound by the MCM helicase, which is activated by forming a complex with the Cdc45 and GINS proteins. The eukaryotic GINS forms a heterotetramer, comprising four types of subunits. On the other hand, the archaeal GINS appears to be either a tetramer formed by two types of subunits in a 2:2 ratio (α₂β₂) or a homotetramer of a single subunit (α₄). Due to the low sequence similarity between the archaeal and eukaryotic GINS subunits, the atomic structures of the archaeal GINS complexes are attracting interest for comparisons of their subunit architectures and organization.</p> <p>Results</p> <p>We determined the crystal structure of the α₂β₂GINS tetramer from <it>Thermococcus kodakaraensis </it>(<it>Tko</it>GINS), comprising Gins51 and Gins23, and compared it with the reported human GINS structures. The backbone structure of each subunit and the tetrameric assembly are similar to those of human GINS. However, the location of the C-terminal small domain of Gins51 is remarkably different between the archaeal and human GINS structures. In addition, <it>Tko</it>GINS exhibits different subunit contacts from those in human GINS, as a consequence of the different relative locations and orientations between the domains. Based on the GINS crystal structures, we built a homology model of the putative homotetrameric GINS from <it>Thermoplasma acidophilum </it>(<it>Tac</it>GINS). Importantly, we propose that a long insertion loop allows the differential positioning of the C-terminal domains and, as a consequence, exclusively leads to the formation of an asymmetric homotetramer rather than a symmetrical one.</p> <p>Conclusions</p> <p>The DNA metabolizing proteins from archaea are similar to those from eukaryotes, and the archaeal multi-subunit complexes are occasionally simplified versions of the eukaryotic ones. The overall similarity in the architectures between the archaeal and eukaryotic GINS complexes suggests that the GINS function, directed through interactions with other protein components, is basically conserved. On the other hand, the different subunit contacts, including the locations and contributions of the C-terminal domains to the tetramer formation, imply the possibility that the archaeal and eukaryotic GINS complexes contribute to DNA unwinding reactions by significantly different mechanisms in terms of the atomic details.</p

Effect of different fuel NO models on the prediction of NO formation/reduction characteristics in a pulverized coal combustion field

To investigate the effects of fuel NO formation models on the prediction of NO concentrations in a coal combustion field, numerical simulations for a coal combustion field in a 760 kW test furnace were performed. Three models, those proposed by De Soete, Chen et al. and Mitchell et al. were employed to calculate fuel NO formation originating from volatile matter. The results show that the model proposed by Mitchell et al. reproduces the tendency of the experimental data better than the other two models. In addition, the difference between the NO conversion ratios of bituminous coal and sub-bituminous coal that contains a high level of moisture was examined in detail using simulation results from the model of Mitchell et al. It was found that the formation of a region with a low oxygen mole fraction immediately downstream of a region with a high NO production rate is essential to realize a low NO conversion ratio

Biperiodic L-Support Disk and Washer Structure (NUCLEAR SCIENCE RESEARCH FACILITY-Beams and Fundamental Reaction)

A high power model of the biperiodic L-support Disk and Washer structure for electron acceleration is fabricated and under test. Two 1.2m long accelerating tubes are coupled by a bridge coupler, which has an RF coupler, a vacuum port, and three frequency tuners. Each end of the bridge-coupled tube set is terminated by a full-cell endplate for the accelerating mode