Swimming in Granular Media

We study a simple model of periodic contraction and extension of large intruders in a granular bed to understand the mechanism for swimming in an otherwise solid media. Using an event-driven simulation, we find optimal conditions that idealized swimmers must use to critically fluidize a sand bed so that it is rigid enough to support a load when needed, but fluid enough to permit motion with minimal resistance. Swimmers - or other intruders - that agitate the bed too rapidly produce large voids that prevent traction from being achieved, while swimmers that move too slowly cannot travel before the bed re-solidifies around them i.e., the swimmers locally probe the fundamental time-scale in a granular packing

Identifying States of a Financial Market

The understanding of complex systems has become a central issue because complex systems exist in a wide range of scientific disciplines. Time series are typical experimental results we have about complex systems. In the analysis of such time series, stationary situations have been extensively studied and correlations have been found to be a very powerful tool. Yet most natural processes are non-stationary. In particular, in times of crisis, accident or trouble, stationarity is lost. As examples we may think of financial markets, biological systems, reactors or the weather. In non-stationary situations analysis becomes very difficult and noise is a severe problem. Following a natural urge to search for order in the system, we endeavor to define states through which systems pass and in which they remain for short times. Success in this respect would allow to get a better understanding of the system and might even lead to methods for controlling the system in more efficient ways. We here concentrate on financial markets because of the easy access we have to good data and because of the strong non-stationary effects recently seen. We analyze the S&P 500 stocks in the 19-year period 1992-2010. Here, we propose such an above mentioned definition of state for a financial market and use it to identify points of drastic change in the correlation structure. These points are mapped to occurrences of financial crises. We find that a wide variety of characteristic correlation structure patterns exist in the observation time window, and that these characteristic correlation structure patterns can be classified into several typical "market states". Using this classification we recognize transitions between different market states. A similarity measure we develop thus affords means of understanding changes in states and of recognizing developments not previously seen.Comment: 9 pages, 8 figure

Death kinetics of Escherichia coli in goat milk and Bacillus licheniformis in cloudberry jam treated by ohmic heating

In recent years, the world’s food industry has focused increasing attention on electrical techniques of food processing. Ohmic heating is one of these techniques that can be considered as a high temperature short time and a purely bulk heating method, having potential applications in processes such as blanching, evaporation and pasteurization in the food industry. However such technology would have to assure the microbiological safety obtained by the conventional cooking methods. Concerning this, the influence of heat treatment by ohmic and conventional technology on death kinetic parameters (D and z values) of Escherichia coli ATCC® 25922 was studied in goat milk. In ohmic treatment lower D values were obtained (D60ºC = 4.2 min, D63ºC = 1.9 min, D65ºC = 0.86 min) as compared to conventional treatment (D63ºC = 3.9 min, D65ºC = 3.5, D67ºC = 2.8 min, D75ºC = 1.5 min). The increase of temperature required for a ten fold decrease in D value was also lower in the ohmic inactivation (z = 8.4 ºC) comparing with the conventional inactivation (z = 23.1 ºC). The death kinetics for Bacillus licheniformis ATCC® 14580 spores in cloudberry jam were also studied under both types of heat inactivation (ohmic and conventional) and similar conclusions were drawn for the D values; lower D values were also obtained for ohmic treatment (D70ºC = 57.1 min, D75ºC = 25.2 min, D80ºC = 7.2 min) as compared to conventional treatment (D70ºC = 85.3 min, D75ºC = 51.0, D80ºC = 18.1 min, D85ºC = 6.0 min, D90ºC = 1.6 min). However, between the z values obtained for those treatments (z ohmic = 11.1 ºC and z conventional = 11.4 ºC) the differences were not significant. In general the results of present work indicate that the ohmic heating provides quicker death kinetics. This opens the perspective for shorter, less aggressive treatments

Interminiband Rabi oscillations in biased semiconductor superlattices

Carrier dynamics at energy level anticrossings in biased semiconductor superlattices, was studied in the time domain by solving the time-dependent Schroedinger equation. The resonant nature of interminiband Rabi oscillations has been explicitly demonstrated to arise from interference of intrawell and Bloch oscillations. We also report a simulation of direct Rabi oscillations across three minibands, in the high field regime, due to interaction between three strongly coupled minibands.Comment: 13 pages, 16 figure

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

The Escherichia coli RutR protein is the master regulator of genes involved in pyrimidine catabolism. Here we have used chromatin immunoprecipitation in combination with DNA microarrays to measure the binding of RutR across the chromosome of exponentially growing E. coli cells. Twenty RutR-binding targets were identified and analysis of these targets generated a DNA consensus logo for RutR binding. Complementary in vitro binding assays showed high-affinity RutR binding to 16 of the 20 targets, with the four low-affinity RutR targets lacking predicted key binding determinants. Surprisingly, most of the DNA targets for RutR are located within coding segments of the genome and appear to have little or no effect on transcript levels in the conditions tested. This contrasts sharply with other E. coli transcription factors whose binding sites are primarily located in intergenic regions. We suggest that either RutR has yet undiscovered function or that evolution has been slow to eliminate non-functional DNA sites for RutR because they do not have an adverse effect on cell fitness

Nonequilibrium Microscopic Distribution of Thermal Current in Particle Systems

A nonequilibrium distribution function of microscopic thermal current is studied by a direct numerical simulation in a thermal conducting steady state of particle systems. Two characteristic temperatures of the thermal current are investigated on the basis of the distribution. It is confirmed that the temperature depends on the current direction; Parallel temperature to the heat-flux is higher than antiparallel one. The difference between the parallel temperature and the antiparallel one is proportional to a macroscopic temperature gradient.Comment: 4 page

Effects of demographic stochasticity on biological community assembly on evolutionary time scales

We study the effects of demographic stochasticity on the long-term dynamics of biological coevolution models of community assembly. The noise is induced in order to check the validity of deterministic population dynamics. While mutualistic communities show little dependence on the stochastic population fluctuations, predator-prey models show strong dependence on the stochasticity, indicating the relevance of the finiteness of the populations. For a predator-prey model, the noise causes drastic decreases in diversity and total population size. The communities that emerge under influence of the noise consist of species strongly coupled with each other and have stronger linear stability around the fixed-point populations than the corresponding noiseless model. The dynamics on evolutionary time scales for the predator-prey model are also altered by the noise. Approximate $1/f$ fluctuations are observed with noise, while $1/f^{2}$ fluctuations are found for the model without demographic noise