483 research outputs found

    A modern materialist approach to abstraction, concreteness and explanation in cognition

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    Shape fluctuations and elastic properties of two-component bilayer membranes

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    The elastic properties of two-component bilayer membranes are studied using a coarse grain model for amphiphilic molecules. The two species of amphiphiles considered here differ only in their length. Molecular Dynamics simulations are performed in order to analyze the shape fluctuations of the two-component bilayer membranes and to determine their bending rigidity. Both the bending rigidity and its inverse are found to be nonmonotonic functions of the mole fraction xBx_{\rm B} of the shorter B-amphiphiles and, thus, do not satisfy a simple lever rule. The intrinsic area of the bilayer also exhibits a nonmonotonic dependence on xBx_{\rm B} and a maximum close to xB≃1/2x_{\rm B} \simeq 1/2.Comment: To appear on Europhysics Letter

    A study of liquid crystals by inverse gas chromatography

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    Role of Bilayer Tilt Difference in Equlibrium Membrane Shapes

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    Lipid bilayer membranes below their main transition have two tilt order parameters, corresponding to the two monolayers. These two tilts may be strongly coupled to membrane shape but only weakly coupled to each other.We discuss some implications of this observation for rippled and saddle phases, spontaneous breaking bilayer tubules, and bicontinuous phases. Tilt diïŹ€erence introduces a lengthscale into the elastic theory of tilted ïŹ‚uid membranes. It can drive an instability of the ïŹ‚at phase; it also provides a simple spontaneous breaking of inversion symmetry seen in some recent experiments

    ValuED: A Blockchain-based Trading Platform to EncourageStudent Engagement in Higher Education

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    The provision of higher education has been changing ever more quickly in the UK and worldwide, as a result of technological, economic, and geopolitical factors. The Covid-19 pandemic has accelerated such changes. The “student experience”—the interaction of students with their institution and with each other—has been changing accordingly, with less face-to-face contact. In this work, we have explored a way to improve student engagement in higher education. We describe “ValuED”, a blockchain-based trading platform using a cryptocurrency. It allows students both to buy and sell goods and services within their university community and to be rewarded for academic engagement. ValuED involves a reputation system to further incentivise participants. We describe the implementation and piloting of this platform and draw conclusions for its future use. The platform’s source code is publicly available

    Computational Approaches to Explore Bacterial Toxin Entry into the Host Cell

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    Many bacteria secrete toxic protein complexes that modify and disrupt essential processes in the infected cell that can lead to cell death. To conduct their action, these toxins often need to cross the cell membrane and reach a specific substrate inside the cell. The investigation of these protein complexes is essential not only for understanding their biological functions but also for the rational design of targeted drug delivery vehicles that must navigate across the cell membrane to deliver their therapeutic payload. Despite the immense advances in experimental techniques, the investigations of the toxin entry mechanism have remained challenging. Computer simulations are robust complementary tools that allow for the exploration of biological processes in exceptional detail. In this review, we first highlight the strength of computational methods, with a special focus on all-atom molecular dynamics, coarse-grained, and mesoscopic models, for exploring different stages of the toxin protein entry mechanism. We then summarize recent developments that are significantly advancing our understanding, notably of the glycolipid–lectin (GL-Lect) endocytosis of bacterial Shiga and cholera toxins. The methods discussed here are also applicable to the design of membrane-penetrating nanoparticles and the study of the phenomenon of protein phase separation at the surface of the membrane. Finally, we discuss other likely routes for future development
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