Proton and Helium Heating by Cascading Turbulence in a Low-beta Plasma

How ions are energized and heated is a fundamental problem in the study of energy dissipation in magnetized plasmas. In particular, the heating of heavy ions (including ${}^{4}\mathrm{He}^{2+}$, ${}^{3}\mathrm{He}^{2+}$ and others) has been a constant concern for understanding the microphysics of impulsive solar flares. In this article, via two-dimensional hybrid-kinetic Particle-in-Cell simulations, we study the heating of Helium ions (${}^{4}\mathrm{He}^{2+}$) by turbulence driven by cascading waves launched at large scales from the left-handed polarized Helium ion cyclotron wave branch of a multi-ion plasma composed of electrons, protons, and Helium ions. We find significant parallel (to the background magnetic field) heating for both Helium ions and protons due to the formation of beams and plateaus in their velocity distribution functions along the background magnetic field. The heating of Helium ions in the direction perpendicular to the magnetic field starts with a lower rate than that in the parallel direction, but overtakes the parallel heating after a few hundreds of the proton gyro-periods due to cyclotron resonances with mainly obliquely propagating waves induced by the cascade of injected Helium ion cyclotron waves at large scales. There is however little evidence for proton heating in the perpendicular direction due to the absence of left-handed polarized cyclotron waves near the proton cyclotron frequency. Our results are useful for understanding the preferential heating of ${}^{3}\mathrm{He}$ and other heavy ions in the ${}^{3}\mathrm{He}$-rich solar energetic particle events, in which Helium ions play a crucial role as a species of background ions regulating the kinetic plasma behavior.Comment: accepted by Ap

ANALYSIS OF LATERAL DISPLACEMENT AND EVALUATION OF TREATMENT MEASURES OF CURVED BEAM: A CASE STUDY

The curved beam bridge exhibits lateral displacement during construction and operation. Taking a curved beam bridge as an example, the status of lateral displacement of the bridge is investigated in detail in this paper. To understand the mechanism of the curved beam lateral displacement, further to determine the curved beam lateral displacement under temperature effect, using ANSYS software to establish solid element model of the curved beam, steady state thermal analysis method is applied to analyze temperature field. Based on the analysis, the lateral displacement under temperature effect is analyzed. Then in order to further explain the lateral displacement mechanism, to discuss the frictional force causing the residual deformation of the rubber bearing to make the lateral displacement of the curved beam, the mechanical mechanism of curved beam under temperature effect is approximately analyzed. On the basis of clarifying the mechanism of lateral displacement, the paper puts forward the reinforcement measures for the curved beam bridge. In order to verify the treatment effect, long-term displacement monitoring is performed on the bridge. Numerical studies and monitoring data show that temperature is the main factor that causes the lateral displacement. Monitoring data over the past year shows that the displacement of the bearing is less than the value of allowable displacement after the reinforcement measures are adopted, and the bridge is in a safe state

RIdeogram : Drawing SVG graphics to visualize and map genome-wide data on the idiograms

Background. Owing to the rapid advances in DNA sequencing technologies, whole genome from more and more species are becoming available at increasing pace. For whole-genome analysis, idiograms provide a very popular, intuitive and effective way to map and visualize the genome-wide information, such asGCcontent, gene and repeat density, DNA methylation distribution, genomic synteny, etc. However, most available software programs and web servers are available only for a few model species, such as human, mouse and fly, or have limited application scenarios. As more and more non-model species are sequenced with chromosome-level assembly being available, tools that can generate idiograms for a broad range of species and be capable of visualizing more data types are needed to help better understanding fundamental genome characteristics. Results. The R package RIdeogram allows users to build high-quality idiograms of any species of interest. It can map continuous and discrete genome-wide data on the idiograms and visualize them in a heat map and track labels, respectively. Conclusion. The visualization of genome-wide data mapping and comparison allow users to quickly establish a clear impression of the chromosomal distribution pattern, thus making RIdeogram a useful tool for any researchers working with omics.</p

Formamide deionized accelerates the somatic embryogenesis of Cunninghamia lanceolata

Aim of the study: To improve the efficiency of the somatic embryogenesis (SE) in Cunninghamia lanceolata. Area of the study: The study was conducted at Nanjing Forestry University (Nanjing, China). Material and methods: Immature cones of C. lanceolata, genotype 01A1 which was planted in Yangkou State-owned Forest Farm (Fujian, China), were used to induced callus. These calli were used to induce SE, concentration gradients of 0 g/L, 0.01134 g/L, 0.1134 g/L, 1.1134 g/L and 11.34 g/L of FD was added, to explore the optimal concentration for promoting SE of C. lanceolata. Main results: Low concentration of FD promoted the maturation of somatic embryos, while high concentration of FD lead to browning of embryogenic callus. The seedling rate and rooting number of seedlings induced by different concentrations of FD were significantly different. Research highlights: This study may aid in the rapid maturation of C. lanceolata somatic embryos and is useful for accelerated C. lanceolata breeding. Keywords: C. lanceolata; Formamide Deionized; Somatic embryogenesis; Seedling rate. Abbreviations used: FD (Formamide Deionized), FD0 (the concentration of 0 g/L FD), FD0.01134 (the concentration of 0.01134 g/L FD), FD0.1134 (the concentration of 0.1134 g/L FD), FD1.134 (the concentration of 1.134 g/L FD), FD11.34 (the concentration of 11.34 g/L FD)

Genome-wide analysis of the GRAS gene family in Liriodendron chinense reveals the putative function in abiotic stress and plant development

IntroductionGRAS genes encode plant-specific transcription factors that play essential roles in plant growth and development. However, the members and the function of the GRAS gene family have not been reported in Liriodendron chinense. L. chinense, a tree species in the Magnolia family that produces excellent timber for daily life and industry. In addition, it is a good relict species for plant evolution research.MethodsTherefore, we conducted a genome-wide study of the LcGRAS gene family and identified 49 LcGRAS genes in L. chinense.ResultsWe found that LcGRAS could be divided into 13 sub-groups, among which there is a unique branch named HAM-t. We carried out RNA sequencing analysis of the somatic embryos from L. chinense and found that LcGRAS genes are mainly expressed after heart-stage embryo development, suggesting that LcGRAS may have a function during somatic embryogenesis. We also investigated whether GRAS genes are responsive to stress by carrying out RNA sequencing (RNA-seq) analysis, and we found that the genes in the PAT subfamily were activated upon stress treatment, suggesting that these genes may help plants survive stressful environments. We found that PIF was downregulated and COR was upregulated after the transient overexpression of PATs, suggesting that PAT may be upstream regulators of cold stress. DiscussionCollectively, LcGRAS genes are conserved and play essential roles in plant development and adaptation to abiotic stress

Halophyte Nitraria billardieri CIPK25 promotes photosynthesis in Arabidopsis under salt stress

The calcineurin B-like (CBL)-interacting protein kinases (CIPKs), a type of plant-specific genes in the calcium signaling pathway, function in response to adverse environments. However, few halophyte derived CIPKs have been studied for their role in plant physiological and developmental adaptation during abiotic stresses, which inhibits the potential application of these genes to improve environmental adaptability of glycophytes. In this study, we constructed Nitraria billardieri CIPK25 overexpressing Arabidopsis and analyzed the seedling development under salt treatment. Our results show that Arabidopsis with NbCIPK25 expression exhibits more vigorous growth than wild type plants under salt condition. To gain insight into the molecular mechanisms underlying salt tolerance, we profiled the transcriptome of WT and transgenic plants via RNA-seq. GO and KEGG analyses revealed that upregulated genes in NbCIPK25 overexpressing seedlings under salt stress are enriched in photosynthesis related terms; Calvin-cycle genes including glyceraldehyde-3-phosphate dehydrogenases (GAPDHs) are significantly upregulated in transgenic plants, which is consistent with a decreased level of NADPH (GAPDH substrate) and increased level of NADP+. Accordingly, NbCIPK25 overexpressing plants exhibited more efficient photosynthesis; soluble sugar and proteins, as photosynthesis products, showed a higher accumulation in transgenic plants. These results provide molecular insight into how NbCIPK25 promotes the expression of genes involved in photosynthesis, thereby maintaining plant growth under salt stress. Our finding supports the potential application of halophyte-derived NbCIPK25 in genetic modification for better salt adaptation

Time-Variant Seismic Fragility of Offshore Continuous Beam Bridges Based on Collapse Analysis

In this paper, the concrete carbonation and chloride-induced corrosion of bridge structure in the service period under the offshore environment were comprehensively considered. Based on the time-varying degradation effect of mechanical properties of materials and continuous damage model, the time-varying seismic fragility of bridge components was analyzed with using incremental dynamic analysis. The time-varying brittleness curves of the bridge system and components were established according to the results of the analysis. According to the analysis of the time-varying fragility of the structure in the complete damage state, the collapse working conditions of the bridge structure and a method of quantifying the fragility coefficient were proposed. The results show that the fragility coefficient of the bridge system is higher than that of the components in the whole life cycle, and all of them increase with the increase of the bridge service cycle. When the peak acceleration of ground is small, the removing of 1# pier is more fragile. When reaching the design service life, the fragility coefficient of the bridge system is about 30% higher than that of the original state. The fragility coefficient of the bridge system in removing of 1# is the maximum value between three working conditions

Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz

Chinese fir (Cunninghamia lanceolata (Lamb.) Hook) is an important coniferous tree species for timber production, which accounts for ~40% of log supply from plantations in southern China. Chloroplast genetic engineering is an exciting field to engineer several valuable tree traits. In this study, we revisited the published complete Chinese fir (NC_021437) and four other coniferous species chloroplast genome sequence in Taxodiaceae. Comparison of their chloroplast genomes revealed three unique inversions found in the downstream of the gene clusters and evolutionary divergence were found, although overall the chloroplast genomic structure of the Cupressaceae linage was conserved. We also investigated the phylogenetic position of Chinese fir among conifers by examining gene functions, selection forces, substitution rates, and the full chloroplast genome sequence. Consistent with previous molecular systematics analysis, the results provided a well-supported phylogeny framework for the Cupressaceae that strongly confirms the “basal” position of Cunninghamia lanceolata. The structure of the Cunninghamia lanceolata chloroplast genome showed a partial lack of one IR copy, rearrangements clearly occurred and slight evolutionary divergence appeared among the cp genome of C. lanceolata, Taiwania cryptomerioides, Taiwania flousiana, Calocedrus formosana and Cryptomeria japonica. The information from sequence divergence and length variation of genes could be further considered for bioengineering research