Ecological network construction based on minimum cumulative resistance for the City of Nanjing, China

With economic growth and the improvement of the urbanization level, human activities have constantly interfered with landscape patterns, resulting in serious threats to regional ecological security. Therefore, it is of great significance to study the evolution and optimization of the landscape patterns. Based on three TM images from 1990, 2000, and 2010, and selected landscape pattern indexes, the changes in the landscape pattern of Nanjing in the past twenty years were studied based on landscape ecology theory using Remote Sensing (RS) and a Geographical Information System (GIS). The ecological network was built on the basis of extracted ecological nodes and the minimum cumulative resistance. The results show that changes in the landscape pattern of the city of Nanjing were notable. Class-level indexes indicate that the farmland landscape area decreased and the degree of patch fragmentation increased. The construction land area increased, and it tended to show dispersed distribution. The proportion of forest land increased and the shape of patches became more complex. The proportion of water firstly showed a decrease, followed by an increase, and the shape of the water became more regular. Landscape-level indexes indicate that biological diversity and the degree of fragmentation increased. Spatial heterogeneity of the natural landscape increased, and the patch shape of each landscape type developed similarly. The results also call for stepping-stones to enhance the connectivity and optimization of the ecological network, which will help improve ecological services and improve the landscape pattern of the city

A Novel Small Acid Soluble Protein Variant Is Important for Spore Resistance of Most Clostridium perfringens Food Poisoning Isolates

Clostridium perfringens is a major cause of food poisoning (FP) in developed countries. C. perfringens isolates usually induce the gastrointestinal symptoms of this FP by producing an enterotoxin that is encoded by a chromosomal (cpe) gene. Those typical FP strains also produce spores that are extremely resistant to food preservation approaches such as heating and chemical preservatives. This resistance favors their survival and subsequent germination in improperly cooked, prepared, or stored foods. The current study identified a novel α/β-type small acid soluble protein, now named Ssp4, and showed that sporulating cultures of FP isolates producing resistant spores consistently express a variant Ssp4 with an Asp substitution at residue 36. In contrast, Gly was detected at Ssp4 residue 36 in C. perfringens strains producing sensitive spores. Studies with isogenic mutants and complementing strains demonstrated the importance of the Asp 36 Ssp4 variant for the exceptional heat and sodium nitrite resistance of spores made by most FP strains carrying a chromosomal cpe gene. Electrophoretic mobility shift assays and DNA binding studies showed that Ssp4 variants with an Asp at residue 36 bind more efficiently and tightly to DNA than do Ssp4 variants with Gly at residue 36. Besides suggesting one possible mechanistic explanation for the highly resistant spore phenotype of most FP strains carrying a chromosomal cpe gene, these findings may facilitate eventual development of targeted strategies to increase killing of the resistant spores in foods. They also provide the first indication that SASP variants can be important contributors to intra-species (and perhaps inter-species) variations in bacterial spore resistance phenotypes. Finally, Ssp4 may contribute to spore resistance properties throughout the genus Clostridium since ssp4 genes also exist in the genomes of other clostridial species

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

An Improved Time Synchronization Algorithm for Wireless Sensor Networks

Wireless sensor network (WSN) has been paid more and more attention to by the international academic and industrial fields. What’s more, it has become a hot research topic with great attention and expectations. There are a lot of technical problems involved in wireless sensor networks, among which, time synchronization technology is one of the supporting technologies in wireless sensor networks. And it is rather essential for the application of wireless sensor network. Two classical time synchronization algorithms are introduced and their advantages and disadvantages are compared. Based on the existing algorithms, an improved time synchronization algorithm is put forward. The improved algorithm was simulated by NS2. The results showed that the proposed algorithm had better time synchronization accuracy and lower network cost than RBS and TPSN algorithm. In summary, the improved time synchronization algorithm has a rather good performance

Ecological Network Construction Based on Minimum Cumulative Resistance for the City of Nanjing, China

With economic growth and the improvement of the urbanization level, human activities have constantly interfered with landscape patterns, resulting in serious threats to regional ecological security. Therefore, it is of great significance to study the evolution and optimization of the landscape patterns. Based on three TM images from 1990, 2000, and 2010, and selected landscape pattern indexes, the changes in the landscape pattern of Nanjing in the past twenty years were studied based on landscape ecology theory using Remote Sensing (RS) and a Geographical Information System (GIS). The ecological network was built on the basis of extracted ecological nodes and the minimum cumulative resistance. The results show that changes in the landscape pattern of the city of Nanjing were notable. Class-level indexes indicate that the farmland landscape area decreased and the degree of patch fragmentation increased. The construction land area increased, and it tended to show dispersed distribution. The proportion of forest land increased and the shape of patches became more complex. The proportion of water firstly showed a decrease, followed by an increase, and the shape of the water became more regular. Landscape-level indexes indicate that biological diversity and the degree of fragmentation increased. Spatial heterogeneity of the natural landscape increased, and the patch shape of each landscape type developed similarly. The results also call for stepping-stones to enhance the connectivity and optimization of the ecological network, which will help improve ecological services and improve the landscape pattern of the city

Genetic Diversity, Antimicrobial Susceptibility, and Biofilm Formation of Cronobacter spp. Recovered from Spices and Cereals

Cronobacter species are important food-borne opportunistic pathogens which have been implicated in the cause of necrotizing enterocolitis, sepsis, and meningitis in neonates and infants. However, these bacteria are routinely found in foodstuffs, clinical specimens, and environmental samples. This study investigated the genetic diversity, antimicrobial susceptibility, and biofilm formation of Cronobacter isolates (n = 40) recovered from spices and cereals in China during 2014–2015. Based on the fusA sequencing analysis, we found that the majority (23/40, 57.5%) of Cronobacter isolates in spices and cereals were C. sakazakii, while the remaining strains were C. dublinensis (6/40, 15.0%), C. malonaticus (5/40, 12.5%), C. turicensis (4/40, 10.0%), and C. universalis (2/40, 5.0%). Multilocus sequence typing (MLST) analysis produced 30 sequence types (STs) among the 40 Cronobacter isolates, with 5 STs (ST4, ST13, ST50, ST129, and ST158) related to neonatal meningitis. The pattern of the overall ST distribution was diverse; in particular, it was revealed that ST148 was the predominant ST, presenting 12.5% within the whole population. MLST assigned 12 isolates to 7 different clonal complexes (CCs), 4, 13, 16, 17, 72, 129, and 143, respectively. The results of O-antigen serotyping indicated that C. sakazakii serotype O1 and O2 were the most two prevalent serotypes. The antimicrobial susceptibility testing showed that the 40 Cronobacter isolates were susceptible to most of the antibiotics tested except for ceftriaxone, meropenem, and aztreona. Of the 40 Cronobacter strains tested, 13 (32.5%) were assessed as weak bioflim producers, one (2.5%) was a moderate biofilm producer, one (2.5%) was strong biofilm producer, and the others (62.5%) were non-biofilm producers. MLST and O-antigen serotyping have indicated that Cronobacter strains recovered from spices and cereals were genetically diverse. Isolates of clinical origin, particularly the C. sakazakii ST4 neonatal meningitic pathovar, have been identified from spices and cereals. Moreover, antimicrobial resistance of Cronobacter strains was observed, which may imply a potential public health risk. Therefore, the surveillance of Cronobacter spp. in spices and cereals should be strengthened to improve epidemiological understandings of Cronobacter infections

Divalent-Metal-Stabilized Aluminophosphates Exhibiting a New Zeolite Framework Topology

Two divalent-metal-containing aluminophosphates, (C₅H₁₄N₂)­[Co₂Al₄P₆O₂₄] and (C₅H₁₄N₂)­[Zn₂Al₄P₆O₂₄] (denoted as MAPO-CJ62; M = Co, Zn), have been hydrothermally synthesized by using <i>N</i>-methylpiperazine as the structure directing agent. Their structures are determined by single crystal X-ray diffraction and further characterized by powder X-ray diffraction, inductively coupled plasma, and thermogravimetric and diffuse reflectance spectroscopy analyses. Both of these two compounds exhibit a new zeolite framework topology. This new zeolite framework contains 1-dimensional 8-ring channels running along the [010] direction. All the metal and P atoms are tetrahedrally coordinated and alternately connected to each other through bridging O atoms. Inductively coupled plasma analysis shows that the molar ratio of M:Al in MAPO-CJ62 is 1:2. The M²⁺ ions in MAPO-CJ62 selectively occupy two of the three possible crystallographically distinct positions. A pure aluminophosphate analogue of MAPO-CJ62 without M²⁺-incorporation, denoted as AlPO-CJ62, has not been obtained in our experiment so far. The necessity of introducing M²⁺ ions and their ordered distribution in MAPO-CJ62 has been elucidated by analyzing the distortions of Al-centered tetrahedra in the hypothetical framework of AlPO-CJ62