Minimax optimization of entanglement witness operator for the quantification of three-qubit mixed-state entanglement

We develop a numerical approach for quantifying entanglement in mixed quantum states by convex-roof entanglement measures, based on the optimal entanglement witness operator and the minimax optimization method. Our approach is applicable to general entanglement measures and states and is an efficient alternative to the conventional approach based on the optimal pure-state decomposition. Compared with the conventional one, it has two important merits: (i) that the global optimality of the solution is quantitatively verifiable, and (ii) that the optimization is considerably simplified by exploiting the common symmetry of the target state and measure. To demonstrate the merits, we quantify Greenberger-Horne-Zeilinger (GHZ) entanglement in a class of three-qubit full-rank mixed states composed of the GHZ state, the W state, and the white noise, the simplest mixtures of states with different genuine multipartite entanglement, which have not been quantified before this work. We discuss some general properties of the form of the optimal witness operator and of the convex structure of mixed states, which are related to the symmetry and the rank of states

A comparison of phenotypic and WGS drug susceptibility testing in Mycobacterium tuberculosis isolates from the Republic of Korea

BACKGROUND: WGS has significant potential to help tackle the major public health problem of TB. The Republic of Korea has the third highest rates of TB of all Organisation for Economic Cooperation and Development countries but there has been very limited use of WGS in TB to date. OBJECTIVES: A retrospective comparison of Mycobacterium tuberculosis (MTB) clinical isolates from 2015 to 2017 from two centres in the Republic of Korea using WGS to compare phenotypic drug susceptibility testing (pDST) and WGS drug susceptibility predictions (WGS-DSP). METHODS: Fifty-seven MTB isolates had DNA extracted and were sequenced using the Illumina HiSeq platform. The WGS analysis was performed using bwa mem, bcftools and IQ-Tree; resistance markers were identified using TB profiler. Phenotypic susceptibilities were carried out at the Supranational TB reference laboratory (Korean Institute of Tuberculosis). RESULTS: For first-line antituberculous drugs concordance for rifampicin, isoniazid, pyrazinamide and ethambutol was 98.25%, 92.98%, 87.72% and 85.96%, respectively. The sensitivity of WGS-DSP compared with pDST for rifampicin, isoniazid, pyrazinamide and ethambutol was 97.30%, 92.11%, 78.95% and 95.65%, respectively. The specificity for these first-line antituberculous drugs was 100%, 94.74%, 92.11% and 79.41%, respectively. The sensitivity and specificity for second-line drugs ranged from 66.67% to 100%, and from 82.98% to 100%, respectively. CONCLUSIONS: This study confirms the potential role for WGS in drug susceptibility prediction, which would reduce turnaround times. However, further larger studies are needed to ensure current databases of drug resistance mutations are reflective of the TB present in the Republic of Korea

Acute pulmonary edema secondary to upper airway obstruction by bilateral vocal cord paralysis after total thyroidectomy -A case report-

This paper reports the case of a 65-year-old woman with a history of mild arterial hypertension who presented with acute pulmonary edema immediately after a total thyroidectomy. The edema was found to have been caused by an acute upper airway obstruction secondary to bilateral vocal cord paralysis. Her pulmonary edema resolved with treatment including reintubation, mechanical ventilation with positive end-expiratory pressure, diuretics, morphine, and fluid restriction. This report discusses the possible pathogenesis of this rare clinical situation. This case highlights the possibility of an acute upper airway obstruction caused by bilateral vocal cord paralysis after a total thyroidectomy and the need for prompt treatment to prevent the development of pulmonary edema

PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440

<p>Abstract</p> <p>Background</p> <p><it>Pseudomonas putida </it>KT2440 (<it>P. putida </it>KT2440) is a highly versatile saprophytic soil bacterium. It is a certified bio-safety host for transferring foreign genes. Therefore, the bacterium is used as a model organism for genetic and physiological studies and for the development of biotechnological applications. In order to provide a more systematic application of the organism, we have constructed a protein-protein interaction (PPI) network analysis system of <it>P. putida </it>KT2440.</p> <p>Results</p> <p>PutidaNET is a comprehensive interaction database and server of <it>P. putida </it>KT2440 which is generated from three protein-protein interaction (PPI) methods. We used PSIMAP (Protein Structural Interactome MAP), PEIMAP (Protein Experimental Interactome MAP), and Domain-domain interactions using iPfam. PutidaNET contains 3,254 proteins, and 82,019 possible interactions consisting of 61,011 (PSIMAP), 4,293 (PEIMAP), and 30,043 (iPfam) interaction pairs except for self interaction. Also, we performed a case study by integrating a protein interaction network and experimental 1-DE/MS-MS analysis data <it>P. putida</it>. We found that 1) major functional modules are involved in various metabolic pathways and ribosomes, and 2) existing PPI sub-networks that are specific to succinate or benzoate metabolism are not in the center as predicted.</p> <p>Conclusion</p> <p>We introduce the PutidaNET which provides predicted interaction partners and functional analyses such as physicochemical properties, KEGG pathway assignment, and Gene Ontology mapping of <it>P. putida </it>KT2440 PutidaNET is freely available at <url>http://sequenceome.kobic.kr/PutidaNET</url>.</p

The effect of cosmic-ray diffusion on the Parker instability

The Parker instability, which has been considered as a process governing the structure of the interstellar medium, is induced by the buoyancy of magnetic fields and cosmic rays. In previous studies, while the magnetic field has been fully incorporated in the context of isothermal magnetohydrodynamics, cosmic rays have normally been treated with the simplifying assumption of infinite diffusion along magnetic field lines but no diffusion across them. The cosmic-ray diffusion is, however, finite. In this work, we fully take into account the diffusion process of cosmic rays in a linear stability analysis of the Parker instability. Cosmic rays are described with the diffusion-convection equation. With realistic values of cosmic-ray diffusion coefficients expected in the interstellar medium, we show that the result of previous studies with the simplifying assumption about cosmic-ray diffusion applies well. The finiteness of the parallel diffusion decreases the growth rate of the Parker instability, while the relatively smaller perpendicular diffusion has no significant effect. We discuss the implication of our result on the role of the Parker instability in the interstellar mediumopen373

Introduction to topological superconductivity and Majorana fermions

This short review article provides a pedagogical introduction to the rapidly growing research field of Majorana fermions in topological superconductors. We first discuss in some details the simplest "toy model" in which Majoranas appear, namely a one-dimensional tight-binding representation of a p-wave superconductor, introduced more than ten years ago by Kitaev. We then give a general introduction to the remarkable properties of Majorana fermions in condensed matter systems, such as their intrinsically non-local nature and exotic exchange statistics, and explain why these quasiparticles are suspected to be especially well suited for low-decoherence quantum information processing. We also discuss the experimentally promising (and perhaps already successfully realized) possibility of creating topological superconductors using semiconductors with strong spin-orbit coupling, proximity-coupled to standard s-wave superconductors and exposed to a magnetic field. The goal is to provide an introduction to the subject for experimentalists or theorists who are new to the field, focusing on the aspects which are most important for understanding the basic physics. The text should be accessible for readers with a basic understanding of quantum mechanics and second quantization, and does not require knowledge of quantum field theory or topological states of matter.Comment: 21 pages, 5 figure

Early detection of cardiac involvement in Miyoshi myopathy: 2D strain echocardiography and late gadolinium enhancement cardiovascular magnetic resonance

<p>Abstract</p> <p>Background</p> <p>Miyoshi myopathy (MM) is an autosomal recessive distal myopathy characterized by early adult onset. Cardiomyopathy is a major clinical manifestation in other muscular dystrophies and an important prognostic factor. Although dysferlin is highly expressed in cardiac muscle, the effect of dysferlin deficiency in cardiac muscle has not been studied. We hypothesized that early myocardial dysfunction could be detected by 2D strain echocardiography and late gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR).</p> <p>Method</p> <p>Five consecutive MM patients (3 male) in whom we detected the DYSF gene mutation and age-matched healthy control subjects were included. None of the patients had history of cardiac disease or signs and symptoms of overt heart failure. Patients were studied using 2D strain echocardiography and CMR, with 2D strain being obtained using the Automated Function Imaging technique.</p> <p>Results</p> <p>All patients had preserved left ventricular systolic function. However, segmental Peak Systolic Longitudinal Strain (PSLS) was decreased in 3 patients. Global PSLS was significantly lower in patients with MM than in control subjects (p = 0.005). Basal anterior septum, basal inferior septum, mid anterior, and mid inferior septum PSLS were significantly lower in patients with MM than in control subjects (P < 0.0001, < 0.0001, 0.038 and 0.003, respectively). Four patients showed fibrosis by LGE. The reduced PSLS lesion detected by 2D strain tended to be in the same area as that which showed fibrosis by LGE.</p> <p>Conclusions</p> <p>Patients with MM showed subclinical involvement of the heart. 2D strain and LGE are sensitive methods for detecting myocardial dysfunction prior to the development of cardiovascular symptoms. The prognostic significance of these findings warrants further longitudinal follow-up.</p

The Parker instability under a linear gravity

A linear stability analysis has been done to a magnetized disk under a linear gravity. We have reduced the linearized perturbation equations to a second-order differential equation that resembles the Schrodinger equation with the potential of a harmonic oscillator. Depending on the signs of energy and potential terms, eigensolutions can be classified into ''continuum'' and ''discrete'' families. When the magnetic field is ignored, the continuum family is identified as the convective mode, while the discrete family is identified as acoustic-gravity waves. If the effective adiabatic index gamma is less than unity, the former develops into the convective instability. When a magnetic field is included, the continuum and discrete families further branch into several solutions with different characters. The continuum family is divided into two modes: one is the original Parker mode, which is a slow MHD mode modulated by the gravity, and the other is a stable Alfven mode. The Parker modes can be either stable or unstable depending on gamma. When gamma is smaller than a critical value gamma(cr), the Parker mode becomes unstable. The discrete family is divided into three modes: a stable fast MHD mode modulated by the gravity, a stable slow MHD mode modulated by the gravity, and an unstable mode that is also attributed to a slow MHD mode. The unstable discrete mode does not always exist. Even though the unstable discrete mode exists, the Parker mode dominates it if the Parker mode is unstable. However, if gamma greater than or equal to gamma(cr), then the discrete mode could be the only unstable one. When gamma is equal gamma(cr), the minimum growth time of the unstable discrete mode is 1.3 x 10(8) yr, with a corresponding length scale of 2.4 kpc. It is suggestive that the corrugated features seen in the Galaxy and external galaxies are related to the unstable discrete modeopen131

OGLE-2018-BLG-0532Lb: Cold Neptune With Possible Jovian Sibling

We report the discovery of the planet OGLE-2018-BLG-0532Lb, with very obvious signatures in the light curve that lead to an estimate of the planet-host mass ratio $q=M_{\rm planet}/M_{\rm host}\simeq 1\times10^{-4}$. Although there are no obvious systematic residuals to this double-lens/single-source (2L1S) fit, we find that $\chi^2$ can be significantly improved by adding either a third lens (3L1S, $\Delta\chi^2=81$) or second source (2L2S, $\Delta\chi^2=65$) to the lens-source geometry. After thorough investigation, we conclude that we cannot decisively distinguish between these two scenarios and therefore focus on the robustly-detected planet. However, given the possible presence of a second planet, we investigate to what degree and with what probability such additional planets may affect seemingly single-planet light curves. Our best estimates for the properties of the lens star and the secure planet are: a host mass $M\sim 0.25\,M_\odot$, system distance $D_L\sim 1\,$kpc and planet mass $m_{p,1}= 8\,M_\oplus$ with projected separation $a_{1,\perp}=1.4\,$au. However, there is a relatively bright $I=18.6$ (and also relatively blue) star projected within $<50\,$mas of the lens, and if future high-resolution images show that this is coincident with the lens, then it is possible that it is the lens, in which case, the lens would be both more massive and more distant than the best-estimated values above.Comment: 48 pages, 9 figures, 7 table