68 research outputs found
Pair Natural Orbital Restricted Open-Shell Configuration Interaction (PNO-ROCIS) Approach for Calculating Xâray Absorption Spectra of Large Chemical Systems
In this work, the
efficiency of first-principles calculations of
X-ray absorption spectra of large chemical systems is drastically
improved. The approach is based on the previously developed restricted
open-shell configuration interaction singles (ROCIS) method and its
parametrized version, based on a density functional theory (DFT) ground-state
determinant ROCIS/DFT. The combination of the ROCIS or DFT/ROCIS methods
with the well-known machinery of the pair natural orbitals (PNOs)
leads to the new PNO-ROCIS and PNO-ROCIS/DFT variants. The PNO-ROCIS
method can deliver calculated metal K-, L-, and M-edge XAS spectra
orders of magnitude faster than ROCIS while maintaining an accuracy
with calculated spectral parameters better than 1% relative to the
original ROCIS method (referred to as canonical ROCIS). The method
is of a black box character, as it does not require any user adjustments,
while it scales quadratically with the system size. It is shown that
for large systems, the size of the virtual molecular orbital (MO)
space is reduced by more than 90% with respect to the canonical ROCIS
method. This allows one to compute the X-ray absorption spectra of
a variety of large âreal-lifeâ chemical systems featuring
hundreds of atoms using a first-principles wave-function-based approach.
Examples chosen from the fields of bioinorganic and solid-state chemistry
include the Co K-edge XAS spectrum of aquacobalamin [H<sub>2</sub>OCbl]<sup>+</sup>, the Fe L-edge XAS spectrum of deoxymyoglobin (DMb),
the Ti L-edge XAS spectrum of rutile TiO<sub>2</sub>, and the Fe M-edge
spectrum of Îą-Fe<sub>2</sub>O<sub>3</sub> hematite. In the largest
calculations presented here, molecules with more than 700 atoms and
cluster models with more than 50 metal centers were employed. In all
the studied cases, very good to excellent agreement with experiment
is obtained. It will be shown that the PNO-ROCIS method provides an
unprecedented performance of wave-function-based methods in the field
of computational X-ray spectroscopy
Restricted Open-Shell Configuration Interaction Cluster Calculations of the LâEdge Xâray Absorption Study of TiO<sub>2</sub> and CaF<sub>2</sub> Solids
X-ray metal L-edge spectroscopy has
proven to be a powerful technique for investigating the electronic
structure of transition-metal centers in coordination compounds and
extended solid systems. We have recently proposed the Restricted Open-Shell
Configuration Interaction Singles (ROCIS) method and its density functional
theory variant (DFT/ROCIS) as methods of general applicability for
interpreting such spectra. In this work, we apply the ROCIS and DFT/ROCIS
methods for the investigation of cluster systems in order to interpret
the Ca and Ti L-edge spectra of CaF<sub>2</sub> and TiO<sub>2</sub> (rutile and anatase), respectively. Cluster models with up to 23
metallic centers are considered together with the hydrogen saturation
and embedding techniques to represent the extended ionic and covalent
bulk environments of CaF<sub>2</sub> and TiO<sub>2</sub>. The experimentally
probed metal coordination environment is discussed in detail. The
influence of local as well as nonlocal effects on the intensity mechanism
is investigated. In addition, the physical origin of the observed
spectral features is qualitatively and quantitatively discussed through
decomposition of the dominant relativistic states in terms of leading
individual 2pâ3d excitations. This contribution serves as an
important reference for future applications of ROCIS and DFT/ROCIS
methods in the field of metal L-edge spectroscopy in solid-state chemistry
A Restricted Open Configuration Interaction with Singles Method To Calculate Valence-to-Core Resonant Xâray Emission Spectra: A Case Study
In
this work, a new protocol for the calculation of valence-to-core resonant
X-ray emission (VtC RXES) spectra is introduced. The approach is based
on the previously developed restricted open configuration interaction
with singles (ROCIS) method and its parametrized version, based on
a ground-state KohnâSham determinant (DFT/ROCIS) method. The
ROCIS approach has the following features: (1) In the first step approximation,
many-particle eigenstates are calculated in which the total spin is
retained as a good quantum number. (2) The ground state with total
spin <i>S</i> and excited states with spin <i>S</i>Ⲡ= <i>S</i>, <i>S</i> ¹ 1, are obtained.
(3) These states have a qualitatively correct multiplet structure.
(4) Quasi-degenerate perturbation theory is used to treat the spinâorbit
coupling operator variationally at the many-particle level. (5) Transition
moments are obtained between the relativistic many-particle states.
The method has shown great potential in the field of X-ray spectroscopy,
in particular in the field of transition-metal L-edge, which cannot
be described correctly with particleâhole theories. In this
work, the method is extended to the calculation of resonant VtC RXES
[alternatively referred to as 1s-VtC resonant inelastic X-ray scattering
(RIXS)] spectra. The complete KramersâDiracâHeisenerg
equation is taken into account. Thus, state interference effects are
treated naturally within this protocol. As a first application of
this protocol, a computational study on the previously reported VtC
RXES plane on a molecular managaneseÂ(V) complex is performed. Starting
from conventional X-ray absorption spectra (XAS), we present a systematic
study that involves calculations and electronic structure analysis
of both the XAS and non-resonant and resonant VtC XES spectra. The
very good agreement between theory and experiment, observed in all
cases, allows us to unravel the complicated intensity mechanism of
these spectroscopic techniques as a synergic function of state polarization
and interference effects. In general, intense features in the RIXS
spectra originate from absorption and emission processes that involve
nonorthogonal transition moments. We also present a graphical method
to determine the sign of the interference contributions
Revisiting the Electronic Structure of FeS Monomers Using ab Initio Ligand Field Theory and the Angular Overlap Model
Ironâsulfur (FeS) proteins
are universally found in nature with actives sites ranging in complexity
from simple monomers to multinuclear sites from two up to eight iron
atoms. These sites include mononuclear (rubredoxins), dinuclear (ferredoxins
and Rieske proteins), trinuclear (e.g., hydrogenases), and tetranuclear
(various ferredoxins and high-potential ironâsulfur proteins).
The electronic structure of the higher-nuclearity clusters is inherently
extremely complex. Hence, it is reasonable to take a bottom-up approach
in which clusters of increasing nuclearity are analyzed in terms of
the properties of their lower nuclearity constituents. In the present
study, the first step is taken by an in-depth analysis of mononuclear
FeS systems. Two different FeS molecules with phenylthiolate and methylthiolate
as ligands are studied in their oxidized and reduced forms using modern
wave function-based ab initio methods. The ab initio electronic spectra
and wave function are presented and analyzed in detail. The very intricate
electronic structureâgeometry relationship in these systems
is analyzed using ab initio ligand field theory (AILFT) in conjunction
with the angular overlap model (AOM) parametrization scheme. The simple
AOM model is used to explain the effect of geometric variations on
the electronic structure. Through a comparison of the ab initio computed
UVâvis absorption spectra and the available experimental spectra,
the low-energy part of the many-particle spectrum is carefully analyzed.
We show ab initio calculated magnetic circular dichroism spectra and
present a comparison with the experimental spectrum. Finally, AILFT
parameters and the ab initio spectra are compared with those obtained
experimentally to understand the effect of the increased covalency
of the thiolate ligands on the electronic structure of FeS monomers
Experimentally Quantifying Small-Molecule Bond Activation Using Valence-to-Core Xâray Emission Spectroscopy
This
work establishes the ability of valence-to-core X-ray emission
spectroscopy (XES) to serve as a direct probe of N<sub>2</sub> bond
activation. A systematic series of iron-N<sub>2</sub> complexes has
been experimentally investigated and the energy of a valence-to-core
XES peak was correlated with NâN bond length and stretching
frequency. Computations demonstrate that, in a simple one-electron
picture, this peak arises from the N<sub>2</sub> 2s2s Ď* orbital,
which becomes less antibonding as the NâN bond is weakened
and broken. Changes as small as 0.02 Ă
in the NâN bond
length may be distinguished using this approach. The results thus
establish valence-to-core XES as an effective probe of small molecule
activation, which should have broad applicability in transition-metal
mediated catalysis
Measuring Spin-Allowed and Spin-Forbidden dâd Excitations in Vanadium Complexes with 2p3d Resonant Inelastic Xâray Scattering
Spectroscopic probes
of the electronic structure of transition metal-containing materials
are invaluable to the design of new molecular catalysts and magnetic
systems. Herein, we show that 2p3d resonant inelastic X-ray scattering
(RIXS) can be used to observe both spin-allowed and (in the V<sup>III</sup> case) spin-forbidden dâd excitation energies in
molecular vanadium complexes. The spin-allowed dâd excitation
energies determined by 2p3d RIXS are in good agreement with available
optical data. In VÂ(acac)<sub>3</sub>, a previously undetected
spin-forbidden singlet state has been observed. The presence of this
feature provides a ligand-field independent signature of V<sup>III</sup>. It is also shown that dâd excitations may be obtained for
porphyrin complexes. This is generally prohibitive using optical approaches
due to intense porphyrin Ď-to-Ď* transitions. In addition,
the intensities of charge-transfer features in 2p3d RIXS spectroscopy
are shown to be a clear indication of metalâligand covalency.
The utility of 2p3d RIXS for future studies of complex inorganic systems
is highlighted
Correlation Between Structural, Spectroscopic, and Reactivity Properties Within a Series of Structurally Analogous Metastable Manganese(III)âAlkylperoxo Complexes
Manganeseâperoxos
are proposed as key intermediates in a
number of important biochemical and synthetic transformations. Our
understanding of the structural, spectroscopic, and reactivity properties
of these metastable species is limited, however, and correlations
between these properties have yet to be established experimentally.
Herein we report the crystallographic structures of a series of structurally
related metastable MnÂ(III)âOOR compounds, and examine their
spectroscopic and reactivity properties. The four reported MnÂ(III)âOOR
compounds extend the number of known end-on MnÂ(III)â(Ρ<sup>1</sup>-peroxos) to six. The ligand backbone is shown to alter the
metalâligand distances and modulate the electronic properties
key to bonding and activation of the peroxo. The mechanism of thermal
decay of these metastable species is examined via variable-temperature
kinetics. Strong correlations between structural (OâO and Mn¡¡¡N<sup>py,quin</sup> distances), spectroscopic (EÂ(Ď<sub>v</sub>*Â(OâO)
â Mn CT band), ν<sub>OâO</sub>), and kinetic (Î<i>H</i><sup>⧧</sup> and Î<i>S</i><sup>⧧</sup>) parameters for these complexes provide compelling evidence for
rate-limiting OâO bond cleavage. Products identified in the
final reaction mixtures of MnÂ(III)âOOR decay are consistent
with homolytic OâO bond scission. The N-heterocyclic amines
and ligand backbone (Et vs Pr) are found to modulate structural and
reactivity properties, and OâO bond activation is shown, both
experimentally and theoretically, to track with metal ion Lewis acidity.
The peroxo OâO bond is shown to gradually become more activated
as the N-heterocyclic amines move closer to the metal ion causing
a decrease in Ď-donation from the peroxo Ď<sub>v</sub>*Â(OâO) orbital. The reported work represents one of very few
examples of experimentally verified relationships between structure
and function
Correlation Between Structural, Spectroscopic, and Reactivity Properties Within a Series of Structurally Analogous Metastable Manganese(III)âAlkylperoxo Complexes
Manganeseâperoxos
are proposed as key intermediates in a
number of important biochemical and synthetic transformations. Our
understanding of the structural, spectroscopic, and reactivity properties
of these metastable species is limited, however, and correlations
between these properties have yet to be established experimentally.
Herein we report the crystallographic structures of a series of structurally
related metastable MnÂ(III)âOOR compounds, and examine their
spectroscopic and reactivity properties. The four reported MnÂ(III)âOOR
compounds extend the number of known end-on MnÂ(III)â(Ρ<sup>1</sup>-peroxos) to six. The ligand backbone is shown to alter the
metalâligand distances and modulate the electronic properties
key to bonding and activation of the peroxo. The mechanism of thermal
decay of these metastable species is examined via variable-temperature
kinetics. Strong correlations between structural (OâO and Mn¡¡¡N<sup>py,quin</sup> distances), spectroscopic (EÂ(Ď<sub>v</sub>*Â(OâO)
â Mn CT band), ν<sub>OâO</sub>), and kinetic (Î<i>H</i><sup>⧧</sup> and Î<i>S</i><sup>⧧</sup>) parameters for these complexes provide compelling evidence for
rate-limiting OâO bond cleavage. Products identified in the
final reaction mixtures of MnÂ(III)âOOR decay are consistent
with homolytic OâO bond scission. The N-heterocyclic amines
and ligand backbone (Et vs Pr) are found to modulate structural and
reactivity properties, and OâO bond activation is shown, both
experimentally and theoretically, to track with metal ion Lewis acidity.
The peroxo OâO bond is shown to gradually become more activated
as the N-heterocyclic amines move closer to the metal ion causing
a decrease in Ď-donation from the peroxo Ď<sub>v</sub>*Â(OâO) orbital. The reported work represents one of very few
examples of experimentally verified relationships between structure
and function
Study of Iron Dimers Reveals Angular Dependence of Valence-to-Core Xâray Emission Spectra
Transition-metal
Kβ X-ray emission spectroscopy (XES) is a developing technique
that probes the occupied molecular orbitals of a metal complex. As
an element-specific probe of metal centers, Kβ XES is finding
increasing applications in catalytic and, in particular, bioinorganic
systems. For the continued development of XES as a probe of these
complex systems, however, the full range of factors which contribute
to XES spectral modulations must be explored. In this report, an investigation
of a series of oxo-bridged iron dimers reveals that the intensity
of valence-to-core features is sensitive to the FeâOâFe
bond angle. The intensity of these features has a well-known dependence
on metalâligand bond distance, but a dependence upon bond angle
has not previously been documented. Herein, we explore the angular
dependence of valence-to-core XES features both experimentally and
computationally. Taken together, these results show that, as the FeâOâFe
angle decreases, the intensity of the KβⳠfeature increases
and that this effect is modulated by increasing amounts of Fe <i>n</i>p mixing into the O 2s orbital at smaller bond angles.
The relevance of these findings to the identification of oxygenated
intermediates in bioinorganic systems is highlighted, with special
emphasis given to the case of soluble methane monooxygenase
Measuring Spin-Allowed and Spin-Forbidden dâd Excitations in Vanadium Complexes with 2p3d Resonant Inelastic Xâray Scattering
Spectroscopic probes
of the electronic structure of transition metal-containing materials
are invaluable to the design of new molecular catalysts and magnetic
systems. Herein, we show that 2p3d resonant inelastic X-ray scattering
(RIXS) can be used to observe both spin-allowed and (in the V<sup>III</sup> case) spin-forbidden dâd excitation energies in
molecular vanadium complexes. The spin-allowed dâd excitation
energies determined by 2p3d RIXS are in good agreement with available
optical data. In VÂ(acac)<sub>3</sub>, a previously undetected
spin-forbidden singlet state has been observed. The presence of this
feature provides a ligand-field independent signature of V<sup>III</sup>. It is also shown that dâd excitations may be obtained for
porphyrin complexes. This is generally prohibitive using optical approaches
due to intense porphyrin Ď-to-Ď* transitions. In addition,
the intensities of charge-transfer features in 2p3d RIXS spectroscopy
are shown to be a clear indication of metalâligand covalency.
The utility of 2p3d RIXS for future studies of complex inorganic systems
is highlighted
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