Calibrating soybean parameters in JULES 5.0 from the US-Ne2/3 FLUXNET sites and the SoyFACE-O3 experiment

This is the final version. Available on open access from the European Geosciences Union via the DOI in this record.Code availability. This study uses JULES version 5.0 releases. The code and configuration for the SoyFACE runs can be downloaded via the Met Office Science Repository Service (MOSRS) at https://code.metoffice.gov.uk/trac/roses-u/browser/a/r/8/6/6/trunk (JULES Collaboration, 2018) (registration required) and are freely available subject to accepting the terms of the software licence. The Leaf Simulator can be downloaded from https://code.metoffice.gov.uk/trac/utils (Williams et al., 2018) (login required).Data availability. Unless otherwise noted, all site observations discussed in this paper were obtained from the site information pages of the AmeriFlux website hosted by the Oak Ridge National Laboratory (http://fluxnet.fluxdata.org/, AmeriFlux collaboration, 2018) or by personal communication with the Mead site research technologist. The longwave radiation, diffuse radiation, and air pressure from Bondville, Illinois, site can be obtained by the SURFRAD (surface radiation) network from ftp://aftp.cmdl.noaa.gov/data/radiation/surfrad/Bondville_IL/ (NOAA, 2018). The SoyFACE data used for the run are available on MOSRS at https://code.metoffice.gov.uk/trac/roses-u/browser/a/r/8/6/6/trunk/driving_data (Ainsoworth, 2017a), https://code.metoffice.gov.uk/trac/roses-u/browser/a/r/8/6/6/trunk/bin/SoyFACE_gas_exchange_data_2009.csv (Ainsoworth, 2017b), and https://code.metoffice.gov.uk/trac/roses-u/browser/a/r/8/6/6/trunk/ancil_data (Ainsoworth, 2017c).Tropospheric ozone (O3) is the third most important anthropogenic greenhouse gas. O3 is detrimental to plant productivity, and it has a significant impact on crop yield. Currently, the Joint UK Land Environment Simulator (JULES) land surface model includes a representation of global crops (JULES-crop) but does not have crop-specific O3 damage parameters and applies default C3 grass O3 parameters for soybean that underestimate O3 damage. Physiological parameters for O3 damage in soybean in JULES-crop were calibrated against leaf gas-exchange measurements from the Soybean Free Air Concentration Enrichment (SoyFACE) with O3 experiment in Illinois, USA. Other plant parameters were calibrated using an extensive array of soybean observations such as crop height and leaf carbon and meteorological data from FLUXNET sites near Mead, Nebraska, USA. The yield, aboveground carbon, and leaf area index (LAI) of soybean from the SoyFACE experiment were used to evaluate the newly calibrated parameters. The result shows good performance for yield, with the modelled yield being within the spread of the SoyFACE observations. Although JULES-crop is able to reproduce observed LAI seasonality, its magnitude is underestimated. The newly calibrated version of JULES will be applied regionally and globally in future JULES simulations. This study helps to build a state-of-the-art impact assessment model and contribute to a more complete understanding of the impacts of climate change on food production.Natural Environment Research Council (NERC)European Commissio