Distribution and Demographics of Marine Mammals in SOCAL Through Photo-Identification, Genetics, and Satellite Telemetry: A Summary of Surveys Conducted 1 July 2011-15 June 2012

Prepared for: Chief of Naval Operations, Energy and Environmental Readiness Division, Washington, D.C.Results from the second year of a three-year project investigating the distribution, demographics, and behavior of cetaceans in the US Navy’s Southern California operational area are summarized. Eighteen small vessel surveys for cetaceans, which included species verification tests in conjunction with M3R (Marine Mammal Monitoring on Navy Undersea Ranges) acoustic monitoring at the Southern California Anti-submarine Warfare Range (SOAR), as well as photo-identification, satellite tagging, and biopsy sampling of species of interest, were conducted in July 2011 and January and March 2012. 112 groups of 14 cetacean species were encountered. Twenty-one satellite tags, some depth reporting, were deployed on four species, with an emphasis on Cuvier’s beaked and fin whales. Among other findings, preliminary results of photo-identification studies combined with results from satellite tag data suggest that both Cuvier’s beaked whales and fin whales may have population sub-units with higher than expected residency to the Southern California Bight. Beaked whales particularly show this higher than expected residency to SOAR.N00244-10-1-005

Distribution and Demographics of Marine Mammals in SOCAL Through Photo-Identification, Genetics, and Satellite Telemetry: A Summary of Surveys Conducted 1 July 2011-15 June 2012

Prepared for: Chief of Naval Operations, Energy and Environmental Readiness Division, Washington, D.C.Results from the second year of a three-year project investigating the distribution, demographics, and behavior of cetaceans in the US Navy’s Southern California operational area are summarized. Eighteen small vessel surveys for cetaceans, which included species verification tests in conjunction with M3R (Marine Mammal Monitoring on Navy Undersea Ranges) acoustic monitoring at the Southern California Anti-submarine Warfare Range (SOAR), as well as photo-identification, satellite tagging, and biopsy sampling of species of interest, were conducted in July 2011 and January and March 2012. 112 groups of 14 cetacean species were encountered. Twenty-one satellite tags, some depth reporting, were deployed on four species, with an emphasis on Cuvier’s beaked and fin whales. Among other findings, preliminary results of photo-identification studies combined with results from satellite tag data suggest that both Cuvier’s beaked whales and fin whales may have population sub-units with higher than expected residency to the Southern California Bight. Beaked whales particularly show this higher than expected residency to SOAR.N00244-10-1-005

Movements and spatial use of odontocetes in the western main Hawaiian Islands: results from satellite-tagging and photo-identification off Kaua‘i and Ni‘ihau in July/August 2011

Although considerable information is available on residency patterns and spatial use of odontocetes in the eastern half of the Hawai‘i Range Complex (HRC), much less is known about odontocetes in the western half of the HRC. In the second year of a three-year effort in the western main Hawaiian Islands we undertook surveys off Kaua‘i and Ni‘ihau in July/August 2011, to examine spatial use and residency patterns using satellite tags, to provide visual verification of acoustically-detected odontocetes on the Pacific Missile Range Facility (PMRF), and to obtain individual identification photographs and biopsy samples for assessment of population identity and structure. During 18 days of field effort we covered 1,972 km of trackline and had 65 encounters with five species of odontocetes. Twenty-four of the encounters, of three species, were cued by acoustic detections from the Marine Mammal Monitoring on Navy Ranges (M3R) system, thus providing species verifications for future use of the M3R system on the PMRF range. During the 65 encounters we obtained 22,645 photos for individual and species identification, and collected 48 biopsy samples for genetic analyses. One encounter with a group of four killer whales was only the second encounter with this species in 12 years of directed field surveys in Hawaiian waters. Photos from that encounter were compared to our photo-identification catalog but no matches were found, further suggesting that there is no population of this species resident to the Hawaiian Islands. There were three encounters with a lone pantropical spotted dolphin, each time in association with a group of spinner dolphins. Photos of this individual matched to a spotted dolphin identified off Kaua‘i in 2004 and in 2005, both times with spinner dolphins, suggesting this individual may be part of a long-term association with spinner dolphins. Four satellite tags were deployed; three on rough-toothed dolphins and one on a bottlenose dolphin. These are the first tag deployments on either species in Hawaiian waters and the first deployments of satellite tags on free-ranging rough-toothed dolphins anywhere in the world. Rough-toothed dolphin tag data were obtained over periods from 7.6 to 18.5 days. Over these periods the three rough-toothed dolphins moved cumulative horizontal distances ranging from 573 to 1,295 km, yet remained an average distance from the tagging locations of from 10.4 to 13.9 km. Median depths used by the three rough-toothed dolphins ranged from 816 to 1,107 m, with median distance from shore ranging from 11.6 to 12.2 km. Two of the three individuals had been previously photo-identified off Kaua‘i (in 2007 or 2008), and all link by association with the resident population from Kaua‘i and Ni‘ihau. Movement and habitat use data were obtained over a 34-day period for the satellite-tagged bottlenose dolphin. During this time the individual remained associated with the island of Kaua‘i using waters with a median depth of 82 m. Although this individual had not been previously photo-identified, others from the group it was in had been previously documented off Kaua‘i and/or Ni‘ihau in 2003-2005, suggesting it is part of the island-resident population. Overall these efforts provide the first unbiased movement and habitat use data for both species in Hawaiian waters.Grant No. N00244-10-1-004

A SURVEY FOR ODONTOCETE CETACEANS OFF KAUA‘I AND NI‘IHAU, HAWAI‘I, DURING OCTOBER AND NOVEMBER 2005: EVIDENCE FOR POPULATION STRUCTURE AND SITE FIDELITY

Considerable uncertainty exists regarding population structure and population sizes of most species of odontocetes in the Hawaiian Islands. A small-boat based survey for odontocetes was undertaken off the islands of Kaua‘i and Ni‘ihau in October and November 2005 to photoidentify individuals and collect genetic samples for examining stock structure. Field effort on 24 days covered 2,194 km of trackline. Survey coverage was from shallow coastal waters out to over 3,000 m depth, though almost half (47%) was in waters less than 500 m in depth. There were 56 sightings of five species of odontocetes: spinner dolphins (30 sightings); bottlenose dolphins (14 sightings); short-finned pilot whales (6 sightings); rough-toothed dolphins (5 sightings); and pantropical spotted dolphins (1 sighting). One hundred and five biopsy samples were collected and 14,960 photographs were taken to document morphology and for individual photo-identification. Photographs of distinctive individuals of three species (bottlenose dolphins, 76 identifications; rough-toothed dolphins, 157 identifications; short-finned pilot whales, 68 identifications) were compared to catalogs of these species from a survey off Kaua‘i and Ni‘ihau in 2003, as well as from efforts off O‘ahu, Maui/Lana‘i and the island of Hawai‘i. Within- and between-year matches were found for all three species with individuals previously identified off Kaua‘i and Ni‘ihau, though no matches were found with individuals off any of the other islands. This suggests site fidelity to specific island areas, and population structure among island areas for all three species. Movements of photographically identified bottlenose dolphins were documented between deep water areas off the islands of Kaua‘i and Ni‘ihau, as well as between shallow (\u3c350 m) and deep (\u3e350 m) waters. A lack of sightings or reports of false killer whales off Kaua‘i or Ni‘ihau during our study, combined with documented movements among the other main Hawaiian Islands, suggest that there is no “resident” population of false killer whales that inhabits waters only off Kaua‘i or Ni‘iha

Range and primary habitats of Hawaiian insular false killer whales: informing determination of critical habitat

The article of record as published may be found at https://dx.doi.org/10.3354/esr00435For species listed under the US Endangered Species Act, federal agencies must designate 'critical habitat', areas containing features essential to conservation and/or that may require special management considerations. In November 2010, the National Marine Fisheries Service proposed listing a small demographically isolated population of false killer whales Pseudorca crassidens in Hawai'i as endangered but has not yet proposed designating critical habitat. We assessed the population's range and heavily used habitat areas using data from 27 satellite tag deployments. Assessment of independence of individuals with temporally overlapping data indicated that data were from 22 'groups'. Further analyses were restricted to 1 individual per group. Tag data were available for periods of between 13 and 105 d (median = 40.5 d), with 8513 locations (93.4% from July-January). Analyses of photo-identification data indicated that the population is divided into 3 large associations of individuals (social clusters), with tag data from 2 of these clusters. Ranges for these 2 clusters were similar, although one used significantly deeper waters, and their high-use areas differed. A minimum convex polygon range encompassing all locations was ~82800 km2, with individuals ranging from Ni'ihau to Hawai'i Island and up to 122 km offshore. Three high-use areas were identified: (1) off the north half of Hawai'i Island, (2) north of Maui and Moloka'i and (3) southwest of Lana'i. Although this analysis provides information useful for decision-making concerning designation of critical habitat, there are likely other high-use areas that have not yet been identified due to seasonal limitations and availability of data from only 2 of the 3 main social clusters.Fieldwork was primarily funded by grants and contracts to Cascadia Research Collective from the National Marine Fisheries Service Pacific Islands Fisheries Science Center and the US Navy (N45) through the Southwest Fisheries Science Center, Woods Hole Oceano- graphic Institution, and the Naval Postgraduate School. The Wild Whale Research Foundation and Dolphin Quest provided additional support.Funded by Naval Postgraduate School.Office of Naval Research Grant N00014081120

First direct measurements of behavioural responses by Cuvier's beaked whales to mid-frequency active sonar

Most marine mammal­ strandings coincident with naval sonar exercises have involved Cuvier's beaked whales (Ziphius cavirostris). We recorded animal movement and acoustic data on two tagged Ziphius and obtained the first direct measurements of behavioural responses of this species to mid-frequency active (MFA) sonar signals. Each recording included a 30-min playback (one 1.6-s simulated MFA sonar signal repeated every 25 s); one whale was also incidentally exposed to MFA sonar from distant naval exercises. Whales responded strongly to playbacks at low received levels (RLs; 89–127 dB re 1 µPa): after ceasing normal fluking and echolocation, they swam rapidly, silently away, extending both dive duration and subsequent non-foraging interval. Distant sonar exercises (78–106 dB re 1 µPa) did not elicit such responses, suggesting that context may moderate reactions. The observed responses to playback occurred at RLs well below current regulatory thresholds; equivalent responses to operational sonars could elevate stranding risk and reduce foraging efficiency.Publisher PDFPeer reviewe

Using individual-based bioenergetic models to predict the aggregate effects of disturbance on populations : a case study with beaked whales and Navy sonar

Funding: This research was supported by the Office of Naval Research (https://www.onr.navy.mil/) grant N0001419WX00431 and N000142012045: “Integrating information on displacement caused by mid-frequency active sonar and measurements of prey field into a population consequences of disturbance model for beaked whales” awarded to Dave Moretti, ND, SW, JH, LT, KB-B, AdR & VH. Funding support for tagging was provided by the US Navy's Office of Naval Research and Living Marine Resources program, the Chief of Naval Operations' Energy and Environmental Readiness Division and the NOAA Fisheries Ocean Acoustics Program.Anthropogenic activities can lead to changes in animal behavior. Predicting population consequences of these behavioral changes requires integrating short-term individual responses into models that forecast population dynamics across multiple generations. This is especially challenging for long-lived animals, because of the different time scales involved. Beaked whales are a group of deep-diving odontocete whales that respond behaviorally when exposed to military mid-frequency active sonar (MFAS), but the effect of these nonlethal responses on beaked whale populations is unknown. Population consequences of aggregate exposure to MFAS was assessed for two beaked whale populations that are regularly present on U.S. Navy training ranges where MFAS is frequently used. Our approach integrates a wide range of data sources, including telemetry data, information on spatial variation in habitat quality, passive acoustic data on the temporal pattern of sonar use and its relationship to beaked whale foraging activity, into an individual-based model with a dynamic bioenergetic module that governs individual life history. The predicted effect of disturbance from MFAS on population abundance ranged between population extinction to a slight increase in population abundance. These effects were driven by the interaction between the temporal pattern of MFAS use, baseline movement patterns, the spatial distribution of prey, the nature of beaked whale behavioral response to MFAS and the top-down impact of whale foraging on prey abundance. Based on these findings, we provide recommendations for monitoring of marine mammal populations and highlight key uncertainties to help guide future directions for assessing population impacts of nonlethal disturbance for these and other long-lived animals.Publisher PDFPeer reviewe

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™

In most areas, estimating the presence and distribution of cryptic marine mammal species, such as beaked whales, is extremely difficult using traditional observational techniques such as ship-based visual line transect surveys. Because acoustic methods permit detection of animals underwater, at night, and in poor weather conditions, passive acoustic observation has been used increasingly often over the last decade to study marine mammal distribution, abundance, and movements, as well as for mitigation of potentially harmful anthropogenic effects. However, there is demand for new, cost-effective tools that allow scientists to monitor areas of interest autonomously with high temporal and spatial resolution in near-real time. Here we describe an autonomous underwater vehicle – a glider – equipped with an acoustic sensor and onboard data processing capabilities to passively scan an area for marine mammals in near-real time. The glider was tested extensively off the west coast of the Island of Hawai'i, USA. The instrument covered approximately 390 km during three weeks at sea and collected a total of 194 h of acoustic data. Detections of beaked whales were successfully reported to shore in near-real time. Manual analysis of the recorded data revealed a high number of vocalizations of delphinids and sperm whales. Furthermore, the glider collected vocalizations of unknown origin very similar to those made by known species of beaked whales. The instrument developed here can be used to cost-effectively screen areas of interest for marine mammals for several months at a time. The near-real-time detection and reporting capabilities of the glider can help to protect marine mammals during potentially harmful anthropogenic activities such as seismic exploration for sub-sea fossil fuels or naval sonar exercises. Furthermore, the glider is capable of under-ice operation, allowing investigation of otherwise inaccessible polar environments that are critical habitats for many endangered marine mammal species

Best practice guidelines for cetacean tagging

Animal-borne electronic instruments (tags) are valuable tools for collecting information on cetacean physiology, behaviour and ecology, and for enhancing conservation and management policies for cetacean populations. Tags allow researchers to track the movement patterns, habitat use andother aspects of the behaviour of animals that are otherwise difficult to observe. They can even be used to monitor the physiology of a tagged animal within its changing environment. Such tags are ideal for identifying and predicting responses to anthropogenic threats, thus facilitating the development of robust mitigation measures. With the increasing need for data best provided by tagging and the increasing availability of tags, such research is becoming more common. Tagging can, however, pose risks to the health and welfare of cetaceans and to personnel involved in tagging operations. Here we provide ‘best practice’ recommendations for cetacean tag design, deployment and follow-up assessment of tagged individuals, compiled by biologists and veterinarians with significant experience in cetacean tagging. This paper is intended to serve as a resource to assist tag users, veterinarians, ethics committees and regulatory agency staff in the implementation of high standards of practice, and to promote the training of specialists in this area. Standardised terminology for describing tag design and illustrations of tag types and attachment sites are provided, along with protocols for tag testing and deployment (both remote and through capture-release), including training of operators. The recommendations emphasise the importance of ensuring that tagging is ethically and scientifically justified for a particular project and that tagging only be used to address bona fide research or conservation questions that are best addressed with tagging, as supported by an exploration of alternative methods. Recommendations are provided for minimising effects on individual animals (e.g. through careful selection of the individual, tag design and implant sterilisation) and for improving knowledge of tagging effects on cetaceans through increased post-tagging monitoring.Publisher PDFPeer reviewe

Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider (TM)

Correction 10 Aug 2012: Klinck H, Mellinger DK, Klinck K, Bogue NM, Luby JC, et al. (2012) Correction: Near-Real-Time Acoustic Monitoring of Beaked Whales and Other Cetaceans Using a Seaglider™. PLOS ONE 7(8): 10.1371/annotation/57ad0b82-87c4-472d-b90b-b9c6f84947f8.In most areas, estimating the presence and distribution of cryptic marine mammal species, such as beaked whales, is extremely difficult using traditional observational techniques such as ship-based visual line transect surveys. Because acoustic methods permit detection of animals underwater, at night, and in poor weather conditions, passive acoustic observation has been used increasingly often over the last decade to study marine mammal distribution, abundance, and movements, as well as for mitigation of potentially harmful anthropogenic effects. However, there is demand for new, cost-effective tools that allow scientists to monitor areas of interest autonomously with high temporal and spatial resolution in near-real time. Here we describe an autonomous underwater vehicle – a glider – equipped with an acoustic sensor and onboard data processing capabilities to passively scan an area for marine mammals in near-real time. The glider was tested extensively off the west coast of the Island of Hawai'i, USA. The instrument covered approximately 390 km during three weeks at sea and collected a total of 194 h of acoustic data. Detections of beaked whales were successfully reported to shore in near-real time. Manual analysis of the recorded data revealed a high number of vocalizations of delphinids and sperm whales. Furthermore, the glider collected vocalizations of unknown origin very similar to those made by known species of beaked whales. The instrument developed here can be used to cost-effectively screen areas of interest for marine mammals for several months at a time. The near-real-time detection and reporting capabilities of the glider can help to protect marine mammals during potentially harmful anthropogenic activities such as seismic exploration for sub-sea fossil fuels or naval sonar exercises. Furthermore, the glider is capable of under-ice operation, allowing investigation of otherwise inaccessible polar environments that are critical habitats for many endangered marine mammal species