How to Use Fewer Markers in Admixture Studies

Swiss Fleckvieh has been established from 1970 as a composite of Simmental and Red Holstein Friesian cattle. Breed composition is currently reported based on pedigree information. Information on ancestry informative molecular markers potentially provides more accurate information. For the analysis Illumina Bovine SNP50 Beadchip data for 495 bulls were used. Markers were selected based on difference in allele frequencies in the pure populations, using FST as an indicator. Performance of sets with decreasing number of markers was compared. The scope of the study was to see how much we can reduce the number of markers based on FST to get a reliability that is close to that with the full set of markers. On these sets of markers hidden Markov models (HMM) and methods used in genomic selection (BayesB, partial least squares regression, LASSO variable selection) were applied. Correlations of admixture levels were estimated and compared with admixture levels based on pedigree information. FST chosen SNP gave very high correlations with pedigree based admixture. Only when using 96 and 48 SNP with the highest FST, correlations dropped to 0.92 and 0.90, respectively

Psychological issues in football officiating: An interview study with top-level referees

The present study aims on the identification of problems in the practice of top-level football refereeing. For this purpose, semi-structured interviews were conducted to collect data from 23 European elite referees. Through inductive content analysis, seven higher-order themes emerged: (1) descriptive, (2) characteristics of a good elite referee, (3) difficulties in decision-making, (4) pre-match preparation, (5) communication through headset, (6) decision-making, and (7) decision-making training. On the one hand, the findings underline the practical relevance of existing scientific research; on the other hand, the relevance of some areas of research, for instance, on the role of biases, is questioned by the interviewees’ statements. A particular need for further research could be revealed regarding the development, optimisation, or evaluation of (1) the pre-match preparation, (2) supporting technical devices, (3) innovative training tools for decision-making, (4) the within-team communication, and (5) complementary methods such as mental practice

Multiple trait model combining random regressions for daily feed intake with single measured performance traits of growing pigs

A random regression model for daily feed intake and a conventional multiple trait animal model for the four traits average daily gain on test (ADG), feed conversion ratio (FCR), carcass lean content and meat quality index were combined to analyse data from 1 449 castrated male Large White pigs performance tested in two French central testing stations in 1997. Group housed pigs fed ad libitum with electronic feed dispensers were tested from 35 to 100 kg live body weight. A quadratic polynomial in days on test was used as a regression function for weekly means of daily feed intake and to escribe its residual variance. The same fixed (batch) and random (additive genetic, pen and individual permanent environmental) effects were used for regression coefficients of feed intake and single measured traits. Variance components were estimated by means of a Bayesian analysis using Gibbs sampling. Four Gibbs chains were run for 550 000 rounds each, from which 50 000 rounds were discarded from the burn-in period. Estimates of posterior means of covariance matrices were calculated from the remaining two million samples. Low heritabilities of linear and quadratic regression coefficients and their unfavourable genetic correlations with other performance traits reveal that altering the shape of the feed intake curve by direct or indirect selection is difficult

Comorbidity of Asperger syndrome and gender identity disorder

The case of a 35-yearold biological woman with Asperger syndrome (AS) and gender identity disorder (GID) fulfilling DSM-IV criteria is reported. Against the background of recently emerging theories of cognitive male pattern underlying autism we present additional psychological assessments in order to discuss any possible interaction or discrimination between AS and GID. Whilst we explain GID as a secondary feature of AS, we examine the assumption of the necessity of treating GID in AS as a primary GID in accordance with international standards. We consider the treatment of GID as compelling, particularly because curative therapy for AS is lacking and with GID treatment in this vein, the patient gains psychosocial improvemen

Finger Length Ratio (2D:4D) in Adults with Gender Identity Disorder

From early childhood, gender identity and the 2nd to 4th finger length ratio (2D:4D) are discriminative characteristics between sexes. Both the human brain and 2D:4D may be influenced by prenatal testosterone levels. This calls for an examination of 2D:4D in patients with gender identity disorder (GID) to study the possible influence of prenatal testosterone on gender identity. Until now, the only study carried out on this issue suggests lower prenatal testosterone levels in right-handed male-to-female GID patients (MtF). We compared 2D:4D of 56 GID patients (39MtF; 17 female-to-male GID patients, FtM) with data from a control sample of 176 men and 190 women. Bivariate group comparisons showed that right hand 2D:4D in MtF was significantly higher (feminized) than in male controls, but similar to female controls. The comparison of 2D:4D ratios of biological women revealed significantly higher (feminized) values for right hands of right handed FtM. Analysis of variance confirmed significant effects for sex and for gender identity on 2D:4D ratios but not for sexual orientation or for the interaction among variables. Our results indirectly point to the possibility of a weak influence of reduced prenatal testosterone as an etiological factor in the multifactorially influenced development of MtF GID. The development of FtM GID seems even more unlikely to be notably influenced by prenatal testosteron

Estimation of Breed Composition, Breed Heterosis and Epistatic Loss for Percent of Live Spermatozoa in Admixed Swiss Fleckvieh Bulls

The objective of this study was to estimate non-additive genetic effects of heterosis and epistatic loss on percent of live spermatozoa in admixed Swiss Fleckvieh bulls, a composite of Simmental and Holstein Friesian cattle. Heterosis is the additional gain in productivity or fitness of crossbred progeny over the mid purebred parents mean which arises from intra-locus gene interaction. Epistatic effects generally reduce productivity or fitness due to lack of gene interactions of genes from different breeds, which is called epistatic loss. Bovine SNP chip data of were used to predict locus specific breed origin of alleles along the autosomes of 815 admixed bulls as well as 147 Holstein Friesian and 207 Simmental bulls representing the parental breeds. The breed proportions for admixed bulls based on 32,899 SNP were used to calculate breed heterozygosity and epistatic loss, considering additive by additive effects for 1,000,000 random pairs of loci. The average Holstein Friesian ancestry in admixed bulls was estimated to be 0.82. Results of fitting different linear mixed models showed that including breed heterozygosity and epistatic loss improved the model fitness (ΔAIC > 3). The heterosis effect and epistatic loss were estimated 2.5(±1.39) % and -0.65(±1.68) % of live spermatozoa, respectively. High correlation (0.97) between breed heterozygosity and epistatic loss values indicate strong confounding of these effects in the model, indicating that it is not possible to properly separate these effects

PREDICTION OF GLOBAL AND LOCAL SIMMENTAL AND RED HOLSTEIN FRIESIAN ADMIXTURE LEVELS IN SWISS FLECKVIEH CATTLE

In this study we estimated levels of local ancestry for individuals of the Swiss Fleckvieh dairy cattle population. It is a composite breed descending from two pure breeds, Simmental (SIM) and Red Holstein Friesian (RHF). Illumina BovineSNP50 Beadchip genotyping data for a total of 500 pure and admixed animals were used for the analysis. The global ancestries estimated by Hidden Markov model were 0.68 and 0.32 for RHF and SIM respectively. Local ancestry levels investigated along chromosomes 2, 3 and 13 indicated that there were some regions across the chromosomes exhibiting substantial fluctuations in admixture. On chromosome 2, in the range of 28 to 31, 41 to 46 and 54 to 56 Mb RHF ancestry is substantially higher than average (0.77-0.78). These regions on chromosome 2 are wide, indicating recent admixture. Along the segments on chromosome 2, many QTLs related to dairy, conformation, reproduction, health and carcass traits were found. We observed sharper excess in favour of SIM on chromosome 3, whereas different regions with excess of RHF and SIM were found out on Chromosome 13. At the first part of chromosome 13, an excess of RHF was observed. Moreover, in regions between 40 and 57 Mb excess of SIM, referred to recent admixture was detected. In respect of RHF chromosome segments in admixed animals, dairy, reproduction and health QTLs were found. In positions where more Simmental segments were detected, QTLs related to meat and carcass traits as well as udder health traits were found. In conclusion, the authors believe that estimation of local admixture levels in crossbred populations can add information to the composite breeds history of selection

Multiple immune abnormalities in tumor necrosis factor and lymphotoxin-α double-deficient mice

To investigate the roles of tumor necrosis factor (TNF) and lymphotoxin (LT)-α in the development and function of the immune system, the Tnf and Ltα genes were simultaneously inactivated in mice by homologous recombination. These mutant mice are highly susceptible to Listeria monocytogenes infection and resistant to endotoxic shock induced by the combined administration of D-galactosamine (D-GaIN) and lipopolysaccharide (LPS). Their splenic microarchitecture is disorganized, characterized by the loss of the clearly defined marginal zone, ill defined T and B cell areas, and absence of MAdCAM-1 and reduced ICAM-1, VCAM-1 and Mac-1 expression. They are devoid of peripheral lymph nodes and Peyer's patches, and show a strong reduction of lgA+ plasma cells in the intestinal lamina propria. The alymphoplasia is accompanied by a marked B lymphocytosis and reduced basal Ig levels. Ig depositions in the renal glomerulus and a strong up-regulation of MHC class I antigen expression on endothelial cells of different tissues are observed. The primary humoral immune response towards sheep red blood cells reveals a defective IgG isotype switch, while that against vescicular stomatitis virus is normal. The cytotoxic T cell responses are attenuated, although still effective, against vaccinia, lymphocytic choriomeningitis virus (LCMV-ARM) and LCMV-WE. In conclusion, the combined inactivation of Tnf and Ltα confirms their essential role in the normal development and function of the immune syste

A picture paints a thousand words: Heart drawings reflect acute distress and illness perception and predict posttraumatic stress symptoms after acute myocardial infarction

The aim of this study was to examine whether heart drawings of patients with acute myocardial infarction reflect acute distress symptoms and negative illness beliefs and predict posttraumatic stress symptoms 3 months post-myocardial infarction. In total, 84 patients aged over 18 years drew pictures of their heart. The larger the area drawn as damaged, the greater were the levels of acute distress (r = 0.36; p < 0.05), negative illness perceptions (r = 0.42, p < 0.05), and posttraumatic stress symptoms (r = 0.54, p < 0.01). Pain drawings may offer a tool to identify maladaptive cognitions and thus patients at risk of posttraumatic stress disorder

The long-term prediction of return to work following serious accidental injuries: A follow up study

Background Considerable indirect costs are incurred by time taken off work following accidental injuries. The aim of this study was to predict return to work following serious accidental injuries. Method 121 severely injured patients were included in the study. Complete follow-up data were available for 85 patients. Two weeks post trauma (T1), patients rated their appraisal of the injury severity and their ability to cope with the injury and its job-related consequences. Time off work was assessed at one (T2) and three years (T3) post accident. The main outcome was the number of days of sick leave taken due to the accidental injury. Results The patients' appraisals a) of the injury severity and b) of their coping abilities regarding the accidental injury and its job-related consequences were significant predictors of the number of sick-leave days taken. Injury severity (ISS), type of accident, age and gender did not contribute significantly to the prediction. Conclusions Return to work in the long term is best predicted by the patients' own appraisal of both their injury severity and the ability to cope with the accidental injury