Determinants for the Timing of Escapement From the Sockeye Salmon Fishery of the Copper River, Alaska: A Simulation Model

A model to estimate determinants for migratory timing of catch and escapement in a terminal salmon fishery is presented. A method was developed to estimate average seasonal migration rates of salmon through a harvest area from catch and escapement data. The time series for the total population of Copper River sockeye salmon (Oncorhynchus nerka) was reconstructed in the reference frame of the commercial harvest area from catch and escapement data. The catchability coefficients (q), derived from the reconstructed populations were found to vary within season and between seasons. The relation between q and effort was attributed to a highly competitive fishery. The difference found between the descriptive statistics for the time densities of catch and catch per unit of effort (CPUE) are attributed to varying q. In a highly competitive terminal fishery the time density of catch was found to be a better representation of the time density of total abundance than that of CPUE. The comparison of the time series of daily proportions of catch and CPUE was found to be a valuable diagnostic tool for determining whether q was variable over a season. It was inferred from the reconstructed time series of total abundance that escapement from the commercial harvest area was underestimated by the sonar counter. The under estimation of escapement from the commercial harvest area may be attributed to two sources; (1) the delta stocks are higher than point estimates found by stock separation studies; (2) the enumeration of escapement to the upper Copper River spawning areas are being underestimated by the sonar counter. The simulation model was a useful tool for investigating the behavior of migratory time densities and for evaluating the success of alternative management strategies in terms of distributing an escapement goal proportionately over time

Assessing hydrosystem influence on delayed mortality of Snake River stream-type Chinook salmon.

Abstract.-Snake River stream-type Chinook salmon Oncorhynchus tshawytscha exhibited substantial delayed mortality despite recent improvements in oceanic and climatic conditions. These salmon declined sharply with the completion of the Columbia River hydrosystem in addition to other anthropogenic impacts and changes in oceanic conditions. Previous analytical approaches have compared management options for halting the population decline. The predicted benefits of these options on salmon recovery hinged on whether the source of the mortality that takes place in the estuary and during early ocean residence is related to earlier hydrosystem experience during downstream migration (i.e., delayed hydrosystem mortality). We analyzed the spatial and temporal patterns of mortality for Chinook salmon populations to determine whether delayed mortality for the Snake River populations decreased during the recent period of favorable oceanic and climatic conditions. We found that Snake River stream-type Chinook salmon populations continued to exhibit survival patterns similar to those of their downriver counterparts but survived only one-fourth to one-third as well. The hypothesis that delayed mortality decreased and became negligible with more favorable oceanic conditions appears inconsistent with the patterns we observed for the common year effect and our estimates of delayed mortality of in-river migrants. A plausible explanation for this persistent pattern of delayed mortality for Snake River populations is that it is related to the construction and operation of the hydrosystem

An evaluation of the Johanson model for roller compaction process development for a high dose API

Roller compaction (RC) is a dry granulation technique applied to improve the flow and compressibility of drug formulations. RC implementation for high drug load formulations can be challenging due to flow issues and a high consumption of active pharmaceutical ingredient (API) for robust process development. This work addresses these challenges using process modelling for design and scale-up of an RC process on the same equipment and transfer to different equipment. A modified application of existing models incorporating a new description of mass transport in the feed screw is evaluated for guaifenesin formulations with a 90% drug loading. The model is calibrated using low-throughput data on a Vector Freund TF Mini RC and used to predict ribbon density and throughput for various process settings at high-throughput. It is found that the modelling framework can reasonably predict high-throughput behaviour on the same RC but the predictive performance decreases for transfer between equipment.</p

Large-scale shock-ionized and photo-ionized gas in M83: the impact of star formation

We investigate the ionization structure of the nebular gas in M83 using the line diagnostic diagram, [O III](5007 \degA)/H{\beta} vs. [S II](6716 \deg A+6731 \deg A)/H{\alpha} with the newly available narrowband images from the Wide Field Camera 3 (WFC3) of the Hubble Space Telescope (HST). We produce the diagnostic diagram on a pixel-by-pixel (0.2" x 0.2") basis and compare it with several photo- and shock-ionization models. For the photo-ionized gas, we observe a gradual increase of the log([O III]/H{\beta}) ratios from the center to the spiral arm, consistent with the metallicity gradient, as the H II regions go from super solar abundance to roughly solar abundance from the center out. Using the diagnostic diagram, we separate the photo-ionized from the shock-ionized component of the gas. We find that the shock-ionized H{\alpha} emission ranges from ~2% to about 15-33% of the total, depending on the separation criteria used. An interesting feature in the diagnostic diagram is an horizontal distribution around log([O III]/H{\beta}) ~ 0. This feature is well fit by a shock-ionization model with 2.0 Z\odot metallicity and shock velocities in the range of 250 km/s to 350 km/s. A low velocity shock component, < 200 km/s, is also detected, and is spatially located at the boundary between the outer ring and the spiral arm. The low velocity shock component can be due to : 1) supernova remnants located nearby, 2) dynamical interaction between the outer ring and the spiral arm, 3) abnormal line ratios from extreme local dust extinction. The current data do not enable us to distinguish among those three possible interpretations. Our main conclusion is that, even at the HST resolution, the shocked gas represents a small fraction of the total ionized gas emission at less than 33% of the total. However, it accounts for virtually all of the mechanical energy produced by the central starburst in M83.Comment: Accepted for publication in ApJ. aastex preprint 12pt, 21 pages, 13 figure

Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis

Chloroplasts develop from proplastids in a process that requires the interplay of nuclear and chloroplast genomes, but key steps in this developmental process have yet to be elucidated. Here, we show that the nucleus-localized transcription factors GATA NITRATE-INDUCIBLE CARBON-METABOLISM-INVOLVED (GNC) and CYTOKININ-RESPONSIVE GATA1 (CGA1) regulate chloroplast development, growth, and division in Arabidopsis (Arabidopsis thaliana). GNC and CGA1 are highly expressed in green tissues, and the phytohormone cytokinin regulates their expression. A gnc cga1 mutant exhibits a reduction in overall chlorophyll levels as well as in chloroplast size in the hypocotyl. Ectopic overexpression of either GNC or CGA1 promotes chloroplast biogenesis in hypocotyl cortex and root pericycle cells, based on increases in the number and size of the chloroplasts, and also results in expanded zones of chloroplast production into the epidermis of hypocotyls and cotyledons and into the cortex of roots. Ectopic overexpression also promotes the development of etioplasts from proplastids in dark-grown seedlings, subsequently enhancing the deetiolation process. Inducible expression of GNC demonstrates that GNC-mediated chloroplast biogenesis can be regulated postembryonically, notably so for chloroplast production in cotyledon epidermal cells. Analysis of the gnc cga1 loss-of-function and overexpression lines supports a role for these transcription factors in regulating the effects of cytokinin on chloroplast division. These data support a model in which GNC and CGA1 serve as two of the master transcriptional regulators of chloroplast biogenesis, acting downstream of cytokinin and mediating the development of chloroplasts from proplastids and enhancing chloroplast growth and division in specific tissues

Improved lung preservation relates to an increase in tubular myelin-associated surfactant protein A

BACKGROUND: Declining levels of surfactant protein A (SP-A) after lung transplantation are suggested to indicate progression of ischemia/reperfusion (IR) injury. We hypothesized that the previously described preservation-dependent improvement of alveolar surfactant integrity after IR was associated with alterations in intraalveolar SP-A levels. METHODS: Using immuno electron microscopy and design-based stereology, amount and distribution of SP-A, and of intracellular surfactant phospholipids (lamellar bodies) as well as infiltration by polymorphonuclear leukocytes (PMNs) and alveolar macrophages were evaluated in rat lungs after IR and preservation with EuroCollins or Celsior. RESULTS: After IR, labelling of tubular myelin for intraalveolar SP-A was significantly increased. In lungs preserved with EuroCollins, the total amount of intracellular surfactant phospholipid was reduced, and infiltration by PMNs and alveolar macrophages was significantly increased. With Celsior no changes in infiltration or intracellular surfactant phospholipid amount occurred. Here, an increase in the number of lamellar bodies per cell was associated with a shift towards smaller lamellar bodies. This accounts for preservation-dependent changes in the balance between surfactant phospholipid secretion and synthesis as well as in inflammatory cell infiltration. CONCLUSION: We suggest that enhanced release of surfactant phospholipids and SP-A represents an early protective response that compensates in part for the inactivation of intraalveolar surfactant in the early phase of IR injury. This beneficial effect can be supported by adequate lung preservation, as e.g. with Celsior, maintaining surfactant integrity and reducing inflammation, either directly (via antioxidants) or indirectly (via improved surfactant integrity)

Modelling massive star feedback with Monte Carlo radiation hydrodynamics: photoionization and radiation pressure in a turbulent cloud (article)

This is the final version of the article. Available from Oxford University Press via the DOI in this record.The dataset associated with this article is located in ORE at: https://doi.org/10.24378/exe.1163We simulate a self-gravitating, turbulent cloud of 1000 M⊙ with photoionization and radiation pressure feedback from a 34 M⊙ star. We use a detailed Monte Carlo radiative transfer scheme alongside the hydrodynamics to compute photoionization and thermal equilibrium with dust grains and multiple atomic species. Using these gas temperatures, dust temperatures, and ionization fractions, we produce self-consistent synthetic observations of line and continuum emission. We find that all material is dispersed from the (15.5 pc)3 grid within 1.6 Myr or 0.74 free-fall times. Mass exits with a peak flux of 2 × 10−3 M⊙ yr−1, showing efficient gas dispersal. The model without radiation pressure has a slight delay in the breakthrough of ionization, but overall its effects are negligible. 85 per cent of the volume, and 40 per cent of the mass, become ionized – dense filaments resist ionization and are swept up into spherical cores with pillars that point radially away from the ionizing star. We use free–free emission at 20 cm to estimate the production rate of ionizing photons. This is almost always underestimated: by a factor of a few at early stages, then by orders of magnitude as mass leaves the volume. We also test the ratio of dust continuum surface brightnesses at 450 and 850 µm to probe dust temperatures. This underestimates the actual temperature by more than a factor of 2 in areas of low column density or high line-of-sight temperature dispersion; the HII region cavity is particularly prone to this discrepancy. However, the probe is accurate in dense locations such as filaments.We thank the referee, Alejandro Raga, for helpful comments. We also thank Thomas Haworth and David Acreman for useful discussions. AA is funded by an STFC studentship. TJH and TAD are funded by STFC Consolidated Grant ST/M00127X/1. The calculations for this paper were performed on the DiRAC Complexity system at the University of Leicester and the DiRAC Data Centric system at Durham University. These form part of the STFC DiRAC HPC Facility (www.dirac.ac.uk). Complexity is funded by BIS National E-Infrastructure capital grant ST/K000373/1 and STFC DiRAC Operations grants ST/K0003259/1 and ST/M006948/1. Data Centric is funded by a BIS National E-infrastructure capital grant ST/K00042X/1, STFC capital grants ST/K00087X/1 and ST/P002307/1, DiRAC Operations grant ST/K003267/1, and Durham University. We also used the University of Exeter Supercomputer, Zen, a DiRAC Facility jointly funded by STFC, the Large Facilities Capital fund of BIS, and the University of Exeter