886 research outputs found
Review of From Spare Oom to War Drobe: Travels in Narnia with my Nine-Year-Old Self
Sarah Waters: Review of Katherine Langrish, From Spare Oom to War Drobe: Travels in Narnia with my Nine-Year-Old Self (London: Darton, Longman and Todd, 2021). 286 pages. $26.00. ISBN 9781913657079
Review of The Faithful Imagination: Papers from the 2018 Frances White Ewbank Colloquium on C. S. Lewis & Friends
Review of Joe Ricke and Ashley Chu, eds., The Faithful Imagination: Papers from the 2018 Frances White Ewbank Colloquium on C. S. Lewis & Friends (Hamden, CT: Winged Lion Press, 2019). 440 pages. $32.95. ISBN 9781935688303
Review of The Lion, the Witch and the Wardrobe (play)
Review of The Lion, the Witch and the Wardrobe, based on the book by C. S. Lewis, directed by Mike Fentiman (based on the original production by Sally Cookson). Produced by Elliott and Harper Productions, and Catherine Schreiber. London, UK: Gillian Lynne Theatre, 30 October, 2022
Horizontal transfer of OC1 transposons in the Tasmanian devil
BACKGROUND There is growing recognition that horizontal DNA transfer, a process known to be common in prokaryotes, is also a significant source of genomic variation in eukaryotes. Horizontal transfer of transposable elements (HTT) may be especially prevalent in eukaryotes given the inherent mobility, widespread occurrence, and prolific abundance of these elements in many eukaryotic genomes. RESULTS Here, we provide evidence for a new case of HTT of the transposon family OposCharlie1 (OC1) in the Tasmanian devil, Sarcophilus harrisii. Bioinformatic analyses of OC1 sequences in the Tasmanian devil genome suggest that this transposon infiltrated the common ancestor of the Dasyuridae family ~17 million years ago. This estimate is corroborated by a PCR-based screen for the presence/absence of this family in Tasmanian devils and closely-related species. CONCLUSIONS This case of HTT is the first to be reported in dasyurids. It brings the number of animal lineages independently invaded by OC1 to 12, and adds a fourth continent to the pandemic-like pattern of invasion of this transposon. In the context of these data, we discuss the evolutionary history of this transposon family and its potential impact on the diversification of marsupials.The authors would like to acknowledge the following organizations for
funding portions of this work: NIH-R01 GM077582 (CF), M.J. Murdock
Charitable Trust (SS) and NSF-MCB-1150213 (SS
Local and global instabilities of flow in a flexible-walled channel
We consider laminar high-Reynolds-number flow through a long finite-length planar channel, where a segment of one wall is replaced by a massless membrane held under longitudinal tension. The flow is driven by a fixed pressure difference across the channel and is described using an integral form of the unsteady boundary-layer equations. The basic flow state, for which the channel has uniform width, exhibits static and oscillatory global instabilities, having distinct modal forms. In contrast, the corresponding local problem (neglecting boundary conditions associated with the rigid parts of the system) is found to be convectively, but not absolutely, unstable to small-amplitude disturbances in the absence of wall damping. We show how amplification of the primary global oscillatory instability can arise entirely from wave reflections with the rigid parts of the system, involving interacting travelling wave flutter and static-divergence modes that are convectively stable; alteration of the mean flow by oscillations makes the onset of this primary instability subcritical. We also show how distinct mechanisms of energy transfer differentiate the primary global mode from other modes of oscillatory instability
Bifurcations and dynamics emergent from lattice and continuum models of bioactive porous media
We study dynamics emergent from a two-dimensional reaction--diffusion process
modelled via a finite lattice dynamical system, as well as an analogous PDE
system, involving spatially nonlocal interactions. These models govern the
evolution of cells in a bioactive porous medium, with evolution of the local
cell density depending on a coupled quasi--static fluid flow problem. We
demonstrate differences emergent from the choice of a discrete lattice or a
continuum for the spatial domain of such a process. We find long--time
oscillations and steady states in cell density in both lattice and continuum
models, but that the continuum model only exhibits solutions with vertical
symmetry, independent of initial data, whereas the finite lattice admits
asymmetric oscillations and steady states arising from symmetry-breaking
bifurcations. We conjecture that it is the structure of the finite lattice
which allows for more complicated asymmetric dynamics. Our analysis suggests
that the origin of both types of oscillations is a nonlocal reaction-diffusion
mechanism mediated by quasi-static fluid flow.Comment: 30 pages, 21 figure
Lattice and Continuum Modelling of a Bioactive Porous Tissue Scaffold
A contemporary procedure to grow artificial tissue is to seed cells onto a
porous biomaterial scaffold and culture it within a perfusion bioreactor to
facilitate the transport of nutrients to growing cells. Typical models of cell
growth for tissue engineering applications make use of spatially homogeneous or
spatially continuous equations to model cell growth, flow of culture medium,
nutrient transport, and their interactions. The network structure of the
physical porous scaffold is often incorporated through parameters in these
models, either phenomenologically or through techniques like mathematical
homogenization. We derive a model on a square grid lattice to demonstrate the
importance of explicitly modelling the network structure of the porous
scaffold, and compare results from this model with those from a modified
continuum model from the literature. We capture two-way coupling between cell
growth and fluid flow by allowing cells to block pores, and by allowing the
shear stress of the fluid to affect cell growth and death. We explore a range
of parameters for both models, and demonstrate quantitative and qualitative
differences between predictions from each of these approaches, including
spatial pattern formation and local oscillations in cell density present only
in the lattice model. These differences suggest that for some parameter
regimes, corresponding to specific cell types and scaffold geometries, the
lattice model gives qualitatively different model predictions than typical
continuum models. Our results inform model selection for bioactive porous
tissue scaffolds, aiding in the development of successful tissue engineering
experiments and eventually clinically successful technologies.Comment: 38 pages, 16 figures. This version includes a much-expanded
introduction, and a new section on nonlinear diffusion in addition to polish
throughou
Is the Donnan effect sufficient to explain swelling in brain tissue slices?
Brain tissue swelling is a dangerous consequence of traumatic injury and is associated with raised intracranial pressure and restricted blood flow. We consider the mechanical effects that drive swelling of brain tissue slices in an ionic solution bath, motivated by recent experimental results that showed that the volume change of tissue slices depends on the ionic concentration of the bathing solution. This result was attributed to the presence of large charged molecules that induce ion concentration gradients to ensure electroneutrality (the Donnan effect), leading to osmotic pressures and water accumulation. We use a mathematical triphasic model for soft tissue to characterize the underlying processes that could lead to the volume changes observed experimentally. We suggest that swelling is caused by an osmotic pressure increase driven by both non-permeating solutes released by necrotic cells, in addition to the Donnan effect. Both effects are necessary to explain the dependence of the tissue slice volume on the ionic bath concentration that was observed experimentally
Wrinkling, creasing, and folding in fiber-reinforced soft tissues
Many biological tissues develop elaborate folds during growth and development. The onset of this folding is often understood in relation to the creasing and wrinkling of a thin elastic layer that grows whilst attached to a large elastic foundation. In reality, many biological tissues are reinforced by fibres and so are intrinsically anisotropic. However, the correlation between the fiber directions and the pattern formed during growth is not well understood. Here, we consider the stability of a two-layer tissue composed of a thin hyperelastic strip adhered to an elastic half-space in which are embedded elastic fibers. The combined object is subject to a uniform compression and, at a critical value of this compression, buckles out of the plane — it wrinkles. We characterize the wrinkle wavelength at onset as a function of the fiber orientation both computationally and analytically and show that the onset of surface instability can be either promoted or inhibited as the fiber stiffness increases, depending on the fibre angle. However, we find that the structure of the resulting folds is approximately independent of the fiber orientation. We also explore numerically the formation of large creases in fiber-reinforced tissue in the post-buckling regime
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