Workshop on the production of swept-area estimates for all hauls in DATRAS for biodiver-sity assessments (WKSAE-DATRAS)

The workshop on the production of swept-area estimates for all hauls in DATRAS for biodiver-sity assessments (WKSAE-DATRAS) considered three groups of surveys for which data are sub-mitted to the Database of Trawl Surveys (DATRAS): various Beam Trawl Surveys, the Northeast Atlantic International Bottom Trawl Survey (Northeast Atlantic IBTS), and the North Sea Inter-national Bottom Trawl Survey (North Sea IBTS). All countries contributing to the above-mentioned surveys were represented by at least one par-ticipant during the workshop, apart from the Netherlands and Norway. The main objectives of the workshop were to establish tow-by-tow swept-area estimates for time-series as far back in time as possible, compare different approaches for the estimates of missing observations, and harmonize the resulting dataseries for biodiversity assessments. For all of the surveys considered, problems with data quality were detected. This included the Beam Trawl Surveys but was most pronounced for the North Sea IBTS. Outliers and potential erroneous data were listed for reporting back to the respective national institutes. In particular, missing observations or algorithms affected wing spread-based swept-area, which is needed in several applications. This workshop compared the Marine Scotland Science-MSS/OSPAR approach, which includes a data quality check for the information needed for the calculation of swept-area, and the DATRAS approach, which depends solely on correctly reported data from the national institutes. Larger data gaps were identified, in particular for several years of the North Sea IBTS. For those surveys, it is proposed that the best possible way forward at this moment is to use estimates based on the MSS/OSPAR approach. However, if dubious records (i.e. extreme outliers) were identified by the MSS/OSPAR and no other information was available, values (e.g. speed over ground or the depth at which a change from short to long sweeps should have happened) were taken from the manual. However, expe-rience has shown that the survey manuals are not followed in all instances, and so persistent country-specific and survey-specific deviations may occur. The national institutes are encouraged to check, correct, and fill in missing survey data through re-submissions to DATRAS. It is recommended that DATRAS data quality control on data sub-mission is extended for the information needed for the calculation of swept-area (e.g. distance, depth, door spread, and wing spread) and that this is done in close cooperation between the ICES Data Centre and the respective ICES survey working groups, WGBEAM (Working Group on Beam Trawl Surveys) and IBTSWG (International Bottom Trawl Survey Working Group).info:eu-repo/semantics/publishedVersio

The second workshop on lists of commercial fish and shellfish species for reporting of MSFD D3 (WKD3Lists2)

WKD3Lists2 created lists of regionally relevant commercial fish and shellfish species (and higher order taxa) for the use of Article 8 reporting by EU member states under Descriptor 3 of the Marine Strategy Framework Directive (MSFD). The regional taxa lists were based on landings data from the Fisheries Dependent Information data base (FDI) provided by EU member states and compiled by the Joint Research Centre (JRC). The taxonomy of landings data was consolidated by regional experts and the consolidated data were combined to obtain absolute and proportional landing weights and values for each (sub)re-gion, which were used to apply dual (weight and vale) selection thresholds to compile (sub)re-gional D3-taxa-lists. Regional D3-taxa-lists were produced for two MSFD regions (Baltic Sea & Black Sea) and eight MSFD subregions: The Greater North Sea, Celtic Seas, the Bay of Biscay and Iberian Coast, Mac-aronesia, Western Mediterranean, the Ionian Sea & Central Mediterranean, the Adriatic Sea and the Aegean-Levantine Sea. To exclude taxa with very low landing weights or value from the final lists, two types of thresh-olds (cumulative and minimum) with differing cut-off values were evaluated (90%, 95%, 98% and 99% for cumulative and 0.1% and 1% for minimum thresholds). Depending on the cut-off value, the number of taxa included varied substantially and in most (sub)regions the application of thresholds reduced the initial number of taxa by more than 50%. WKD3Lists2 did not recommend any threshold type or cut-off value to be applied generically in all (sub)regions, but identified trade-offs between inclusiveness and parsimony of relevant con-tent i.e. higher cut-off values will lead to longer lists including many taxa with relatively low landings weights/values. In some (sub)regions, thresholds with lower cut-off values (90% to 95%) were considered feasible by regional experts (Mediterranean subregions, Bay of Biscay and Iberian Coast, Macaronesia), whereas in other MSFD (sub)regions cut-off values in the range of 98-99% were considered as appropriate (Baltic Sea, Greater North Sea, Celtic Seas). The regional D3-taxa lists by WKD3Lists2 were created without considering the availability of data or assessments i.e. many species are included, for which no assessment information is avail-able. WKD3Lists2 decided on this approach because a representative selection of commercially targeted taxa was considered to indicate knowledge and data gaps in current data collection and assessment schemes. Regional species lists shall be used by EU member states for the national reporting of D3. Stocks and species from the regional lists shall be considered by member states, and additional stocks/species can be added where appropriate (e.g. those stocks/species of national or local of importance that do not appear on the regional lists). x WKD3Lists2 discussed and compiled recommendations on how Member States can complement the regional lists of D3-taxa. A key recommendation is to maintain taxa reported in 2018 under D3, even if they are not part of the regional D3-taxa list for 2024. Wherever possible, Member States should report on stock level. WKD3Lists2 also discussed linkages between D1 and D3-reporting of commercial taxa.info:eu-repo/semantics/publishedVersio

Workshop to review and progress the reported lists of eu msfd descriptor 3 ( (WKD3LISTS)

info:eu-repo/semantics/publishedVersio

Workshop to scope and preselect indicators for criterion D3C3 under MSFD decision (EU) 2017/848 (WKD3C3SCOPE)

The workshop to scope and preselect indicators for Descriptor 3 criterion 3 under MSFD Commission Decision (EU) 2017/848 (WKD3C3SCOPE) provided a platform for experts from the EU member states and relevant regional bodies to meet and support development and progress the assessment methodology, based on a request by the EC (DGENV). WKD3C3SCOPE is the first of a series of three workshops (WKD3C3THRESHOLDS and WKSIMULD3) to provide guidance in relation to operational indicators for MSFD D3C3. The workshop was organized as a series of presentations with intermittent group discussions. On the first day of the workshop the participants discussed what defines a ‘healthy population structure’ for species with different life history traits (ToR a). During the following days, the group discussed and identified relevant D3C3 indicators (ToR b) and developed criteria to select among the identified D3C3 indicators to allow further testing and setting of thresholds at WKD3C3THRESHOLDS (ToR c). The participants found that overall, healthy fish stocks are characterized by high productivity, wide age and size structuring in the population, and the ability to quickly recover from disturbances. The groups noted that environmental factors, along with stock biomass and fishing pressure, influence the productivity and health of a stock, with environment playing a particularly large role in the recruitment of short-lived stocks. It was suggested that the age structure of a stock might be more relevant for evaluating the health of long-lived stocks. However, it was acknowledged that not all stocks have sufficient data to evaluate all proposed indicators, and a single indicator is unlikely to suffice for all stocks. Data availability, species- specific factors and regional or sub-regional variation are thus also important considerations. In relation to ToR b, the participants presented their work on potential indicators including: recruitment time-series, proportion of fish larger than the mean size of first sexual maturation, F rec/Fbar, length distribution L 90, relative proportion of old fish above A 90, indicators of spawner quality, and SSB/R. A discussion on pros/cons, benefits to the population of high or low indicator values, benefits supported by empirical evidence, applicability to data-poor stocks and benefits supported by simulation/theoretical considerations followed the presentations. Finally, in relation to ToR c, the difficulty emerged in ranking the indicators alone without considering the data used to estimate them and a new set of evaluation criteria for use in WKD3C3THRESHOLDS were defined. Based on the outputs of the meeting a list of indicators to be further evaluated has been drafted, which also emphasizes the stocks for which studies have empirically demonstrated effects on productivity. In addition to the listed indicators, indicators of genetic diversity and proportion of fish with parasite infestation were mentioned but to the knowledge of the participants, widespread data for these are currently not publicly available.info:eu-repo/semantics/publishedVersio

Workshop on the production of abundance estimates for sensitive species (WKABSENS). ICES Scientific Reports, 3:96.

The Workshop on the production of annual estimates of abundance of sensitive species (WKABSENS) met to define sensitive species, collate ICES assessments of abundance where these are available, and estimate indices of their abundance per swept-area where not, for the OSPAR area. The analyses identified 140 potentially sensitive species or species complexes, among which 10 are diadromous and three are coastal, 20 have uncertain species ID and nine were identified as sensitive in only one of the sources examined. Among the sensitive species and species complexes, there was sufficient data to provide abundance indices for 50 species, of which 16 had existing stock assessments whereas the workshop derived abundance estimates for the remaining 34 species from survey data. Three statistical modelling approaches (binomial, General Additive Models (GAMs) and VAST) and were explored and the final abundance indices were calculated using GAMs. The species were divided into stocks before estimating abundance indices where these could be identified from the spatial distribution of the species in the survey. The group considered that a similar analysis using data from additional surveys, commercial indices or data from bycatch observers can potentially provide improved abundance estimates for species with variable or low catchability, such as deep-water and pelagic species

Functional association between eyegone and HP1a mediates wingless transcriptional repression during development

The eyegone (eyg) gene encodes Eyg, a transcription factor of the Pax family with multiple roles during Drosophila development. Although Eyg has been shown to act as a repressor, nothing is known about the mechanism by which it represses its target genes. Here, we show that Eyg forms a protein complex with heterochromatin protein 1a (HP1a). Both proteins bind to the same chromatin regions on polytene chromosomes and act cooperatively to suppress variegation and mediate gene silencing. In addition, Eyg binds to a wingless (wg) enhancer region, recruiting HP1a to assemble a closed, heterochromatin-like conformation that represses transcription of the wg gene. We describe here the evidence that suggests that Eyg, encoded by eyegone (eyg), represses wingless (wg) during eye development by association with HP1a. We show that Eyg forms a protein complex with HP1a and both proteins colocalize on salivary gland polytene chromosomes. Using position effect variegation (PEV) experiments, we demonstrated that eyg has a dose-dependent effect on heterochromatin gene silencing and identified a genetic interaction with HP1a in this process. We further demonstrated that HP1a binds to the same wg enhancer element as Eyg. DNase I sensitivity assays indicated that this enhancer region has a closed heterochromatin-like conformation, which becomes open in eyg mutants. In these mutants, much less HP1a binds to the wg enhancer region, as shown by ChIP experiments. Furthermore, as previously described for Eyg, a reduction in the amount of HP1a in the eye imaginal disc derepresses wg. Together, our results suggest a model in which Eyg specifically binds to the wg enhancer region, recruiting HP1a to that site. The recruitment of HP1a prevents transcription by favoring a closed, heterochromatin-like structure. Thus, for the first time, we show that HP1a plays a direct role in the repression of a developmentally regulated gene, wg, during Drosophila eye development. © 2012, American Society for Microbiology.Ministerio Español de Ciencia y Tecnología; the Consolider program; Fundación Ramón ArecesPeer Reviewe

A new role for hth in the early pre-blastodermic divisions in drosophila.

In drosophila, the preblastodermic syncytial nuclear divisions occur very fast. In this short period of time chromosomes must condense, segregate and decondense, in conditions governed by maternally provided RNAs and proteins. In this report, we show that the Homothorax (Hth) transcription factor is maternally provided and that its function is necessary for the proper assembly of the centric/centromeric heterochromatin during preblastodermic divisions. Embryos lacking the hth maternally-derived transcript, show abnormal localisation of the centromeric CID protein, and aberrant chromosomal segregation. In this syncytial context, Hth presumably acts together with its partner Extradenticle (Exd) and the RNA PolII, to facilitate transcription of satellite repeats. The transcripts derived from these sequences are needed for the correct assembly of the centric heterochromatin.The work was supported by grants CCG07-CSIC/SAL-1710 and BFU2008- 00815/BMC.Peer reviewe

A roadmap to reduce the risk of overexploiting EU marine living resources in a changing ocean

We provide a balanced overview of how risk assessment and management is being tackled in the European Union (EU) and beyond to address the challenges of overexploiting marine living resources in EU waters. We aim to guide EU fisheries and aquaculture policymakers towards key actions to foster the transition to responsible, sustainable, clean energy, and resilient fisheries and aquaculture sectors, aligning with EU environmental objectives under the European Green Deal and the Common Fisheries Policy. Despite progress in reducing fishing pressure on some stocks in recent years, most of the stated (single-stock) sustainability objectives still need to be met. The risk of overexploiting marine resources remains high, especially when combined with other pressures such as pollution and climate change. Risk is defined as the probability of an adverse event arising from natural or human activities and excessive pressures. Scientists have documented these pressures, proposing regional risk assessments to support adequate risk-based management of human activities impacting marine and coastal regions. As a next step, we recall actionable short- to long-term recommendations to reduce the risks associated with exploiting these natural resources and ensure their sustainability and resilience. This includes actions the EU can take to improve and implement fisheries policy while prioritising less harmful alternatives among current fishing methods and considering the three pillars of sustainability i.e. environmental, economic and social. Such actions include capturing in scientific advice the strong, causal links between pressures induced by human activities, natural disturbances and ecosystem states; such understanding can be used in an uncertain and changing environment, with ocean productivity possibly trending towards new levels. Finally, we restate that conserving by reducing pressures and restoring the integrity of marine ecosystems is crucial for minimising the risk of overexploitation and ensuring future fishing and farming opportunities. This is the aim of an Ecosystem Approach to fisheries and aquaculture – it should safeguard the long-term economic and social capital already invested by the public and private sectors in exploiting marine living resources to continue delivering healthy, low-carbon, low-impact seafood to EU citizens and beyond