Environmental DNA (eDNA) reveals potential for interoceanic fish invasions across the Panama Canal

Interoceanic canals can facilitate biological invasions as they connect the world's oceans and remove dispersal barriers between bioregions. As a consequence, multiple opportunities for biotic exchange arise and the resulting establishment of migrant species often causes adverse ecological and economic impacts. The Panama Canal is a key region for biotic exchange as it connects the Pacific and Atlantic Oceans in Central America. In this study, we used two complementary methods (environmental DNA (eDNA) metabarcoding and gillnetting) to survey fish communities in this unique waterway. Using COI (cytochrome oxidase subunit I) metabarcoding, we detected a total of 142 fish species, including evidence for the presence of sixteen Atlantic and eight Pacific marine fish in different freshwater sections of the Canal. Of these, nine are potentially new records. Molecular data did not capture all species caught with gillnets, but generally provided a more complete image of the known fish fauna as more small-bodied fish species were detected. Diversity indices based on eDNA surveys revealed significant differences across different sections of the Canal reflecting in part the prevailing environmental conditions. The observed increase in the presence of marine fish species in the Canal indicates a growing potential for interoceanic fish invasions. The potential ecological and evolutionary consequences of this increase in marine fishes are not only restricted to the fish fauna in the Canal as they could also impact adjacent ecosystems in the Pacific and Atlantic Oceans

Dynamics and diversity of bacteria associated with the disease vectors Aedes aegypti and Aedes albopictus

Aedes aegypti and Aedes albopictus develop in the same aquatic sites where they encounter microorganisms that infuence their life history and capacity to transmit human arboviruses. Some bacteria such as Wolbachia are currently being considered for the control of Dengue, Chikungunya and Zika. Yet little is known about the dynamics and diversity of Aedes-associated bacteria, including larval habitat features that shape their tempo-spatial distribution. We applied large-scale 16S rRNA amplicon sequencing to 960 adults and larvae of both Ae. aegypti and Ae. albopictus mosquitoes from 59 sampling sites widely distributed across nine provinces of Panama. We fnd both species share a limited, yet highly variable core microbiota, refecting high stochasticity within their oviposition habitats. Despite sharing a large proportion of microbiota, Ae. aegypti harbours higher bacterial diversity than Ae. albopictus, primarily due to rarer bacterial groups at the larval stage. We fnd signifcant diferences between the bacterial communities of larvae and adult mosquitoes, and among samples from metal and ceramic containers. However, we fnd little support for geography, water temperature and pH as predictors of bacterial associates. We report a low incidence of natural Wolbachia infection for both Aedes and its geographical distribution. This baseline information provides a foundation for studies on the functions and interactions of Aedes-associated bacteria with consequences for bio-control within Panama.Aedes aegypti and Aedes albopictus develop in the same aquatic sites where they encounter microorganisms that infuence their life history and capacity to transmit human arboviruses. Some bacteria such as Wolbachia are currently being considered for the control of Dengue, Chikungunya and Zika. Yet little is known about the dynamics and diversity of Aedes-associated bacteria, including larval habitat features that shape their tempo-spatial distribution. We applied large-scale 16S rRNA amplicon sequencing to 960 adults and larvae of both Ae. aegypti and Ae. albopictus mosquitoes from 59 sampling sites widely distributed across nine provinces of Panama. We fnd both species share a limited, yet highly variable core microbiota, refecting high stochasticity within their oviposition habitats. Despite sharing a large proportion of microbiota, Ae. aegypti harbours higher bacterial diversity than Ae. albopictus, primarily due to rarer bacterial groups at the larval stage. We fnd signifcant diferences between the bacterial communities of larvae and adult mosquitoes, and among samples from metal and ceramic containers. However, we fnd little support for geography, water temperature and pH as predictors of bacterial associates. We report a low incidence of natural Wolbachia infection for both Aedes and its geographical distribution. This baseline information provides a foundation for studies on the functions and interactions of Aedes-associated bacteria with consequences for bio-control within Panama

Comparison of morphological variation indicative of ploidy-level in Phragmites australis (Poaceae) from Eastern North America.

ABSTRACT. Variation in ploidy levels in Phragmites australis is a welldocumented phenomenon although North American populations are less studied than European ones. It has been suggested, based on morphological measurements, that native and introduced P. australis subspecies in North America represent different ploidy levels. The objectives of this study were to assess whether guard cell size and stomatal density, morphological differences indicative of variation in ploidy level between native and introduced P. australis, are truly associated with different ploidy levels as measured by flow cytometry. Significant differences in guard cell size and stomatal densities were found between subspecies, with native plants having larger guard cells and lower stomatal density. However, no differences in 2C DNA content were found. Although these morphological measurements are significantly correlated with subspecies and can be added to the list of useful morphological characters distinguishing the two subspecies, it does not appear that they are accurate indicators of ploidy levels. Potential implications of these differences on the invasion biology of introduced P. australis are discussed

The Role of Phosphorus Limitation in Shaping Soil Bacterial Communities and Their Metabolic Capabilities.

Phosphorus (P) is an essential nutrient that is often in limited supply, with P availability constraining biomass production in many terrestrial ecosystems. Despite decades of work on plant responses to P deficiency and the importance of soil microbes to terrestrial ecosystem processes, how soil microbes respond to, and cope with, P deficiencies remains poorly understood. We studied 583 soils from two independent sample sets that each span broad natural gradients in extractable soil P and collectively represent diverse biomes, including tropical forests, temperate grasslands, and arid shrublands. We paired marker gene and shotgun metagenomic analyses to determine how soil bacterial and archaeal communities respond to differences in soil P availability and to detect corresponding shifts in functional attributes. We identified microbial taxa that are consistently responsive to extractable soil P, with those taxa found in low P soils being more likely to have traits typical of oligotrophic life history strategies. Using environmental niche modeling of genes and gene pathways, we found an enriched abundance of key genes in low P soils linked to the carbon-phosphorus (C-P) lyase and phosphonotase degradation pathways, along with key components of the high-affinity phosphate-specific transporter (Pst) and phosphate regulon (Pho) systems. Taken together, these analyses suggest that catabolism of phosphonates is an important strategy used by bacteria to scavenge phosphate in P-limited soils. Surprisingly, these same pathways are important for bacterial growth in P-limited marine waters, highlighting the shared metabolic strategies used by both terrestrial and marine microbes to cope with P limitation.</div

Habitat disturbance and the organization of bacterial communities in Neotropical hematophagous arthropods

The microbiome plays a key role in the biology, ecology and evolution of arthropod vectors of human pathogens. Vector-bacterial interactions could alter disease transmission dynamics through modulating pathogen replication and/or vector fitness. Nonetheless, our understanding of the factors shaping the bacterial community in arthropod vectors is incomplete. Using large-scale 16S amplicon sequencing, we examine how habitat disturbance structures the bacterial assemblages of field-collected whole-body hematophagous arthropods that vector human pathogens including mosquitoes (Culicidae), sand flies (Psychodidae), biting midges (Ceratopogonidae) and hard ticks (Ixodidae). We found that all comparisons of the bacterial community among species yielded statistically significant differences, but a difference was not observed between adults and nymphs of the hard tick, Haemaphysalis juxtakochi. While Culicoides species had the most distinct bacterial community among dipterans, tick species were composed of entirely different bacterial OTU’s. We observed differences in the proportions of some bacterial types between pristine and disturbed habitats for Coquillettidia mosquitoes, Culex mosquitoes, and Lutzomyia sand flies, but their associations differed within and among arthropod assemblages. In contrast, habitat quality was a poor predictor of differences in bacterial classes for Culicoides biting midges and hard tick species. In general, similarities in the bacterial communities among hematophagous arthropods could be explained by their phylogenetic relatedness, although intraspecific variation seems influenced by habitat disturbance.The microbiome plays a key role in the biology, ecology and evolution of arthropod vectors of human pathogens. Vector-bacterial interactions could alter disease transmission dynamics through modulating pathogen replication and/or vector fitness. Nonetheless, our understanding of the factors shaping the bacterial community in arthropod vectors is incomplete. Using large-scale 16S amplicon sequencing, we examine how habitat disturbance structures the bacterial assemblages of field-collected whole-body hematophagous arthropods that vector human pathogens including mosquitoes (Culicidae), sand flies (Psychodidae), biting midges (Ceratopogonidae) and hard ticks (Ixodidae). We found that all comparisons of the bacterial community among species yielded statistically significant differences, but a difference was not observed between adults and nymphs of the hard tick, Haemaphysalis juxtakochi. While Culicoides species had the most distinct bacterial community among dipterans, tick species were composed of entirely different bacterial OTU’s. We observed differences in the proportions of some bacterial types between pristine and disturbed habitats for Coquillettidia mosquitoes, Culex mosquitoes, and Lutzomyia sand flies, but their associations differed within and among arthropod assemblages. In contrast, habitat quality was a poor predictor of differences in bacterial classes for Culicoides biting midges and hard tick species. In general, similarities in the bacterial communities among hematophagous arthropods could be explained by their phylogenetic relatedness, although intraspecific variation seems influenced by habitat disturbance

The value of repetitive sequences in chloroplast DNA for phylogeographic inference: A comment on Vachon & Freeland 2011

In a recent Technical Advance article, Vachon and Freeland (2011, Molecular Ecology Resources, 11, 279-285.) evaluate the utility of repetitive and non-repetitive variation in the chloroplast genome for phylogeographic inference, using variation in Phragmites australis as an example. While we agree that repetitive and nonrepetitive regions evolve at different rates and homoplasy can impact results, we disagree with the conclusion that repetitive regions are inappropriate for large-scale phylogeographic studies. Here we describe limitations to the study dataset and analysis, and provide an alternative viewpoint on the utility of repetitive regions for phylogeographic studies. \ua9 2012 Blackwell Publishing Ltd

NOTES ON PHRAGMITES AUSTRALIS (POACEAE: ARUNDINOIDEAE) IN NORTH AMERICA

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The reproductive biology of Saccharum spontaneum L.: implications for management of this invasive weed in Panama

Saccharum spontaneum L. is an invasive grass that has spread extensively in disturbed areas throughout the Panama Canal watershed (PCW), where it has created a fire hazard and inhibited reforestation efforts. Currently physical removal of aboveground biomass is the primary means of controlling this weed, which is largely ineffective and does little to inhibit spread of the species. Little is known about reproduction of this species, although it is both rhizomatous and produces abundant seed. Here we report a series of studies looking at some of the basic reproductive mechanisms and strategies utilised by S. spontaneum to provide information to support development of better targeted management strategies.We found that seed produced between September and November was germinable both in the lab and in situ. Genetic diversity of mature stands was assessed using microsatellite markers and found to be high, even at small scales. Studies of vegetative reproduction showed that buds on stems that had been dried for up to six weeks were still capable of sprouting. Separate experiments showed that stem fragments could sprout when left on the surface or buried shallowly and that larger pieces sprouted more readily than smaller pieces.Collectively these results demonstrate that S. spontaneum in the PCW has the capability to produce many propagules that can successfully recruit and it is likely that seed dispersal drives the spread of the species. Timing of management actions to reduce flowering would significantly reduce the seed load into the environment and help to prevent spread to new sites. Similarly, where biomass is cut, cutting stems into smaller pieces will allow the stems to dry out and reduce the ability of buds to sprout. Additionally, attention should be paid to prevent accidental transport to new sites on machinery