5,476 research outputs found

    Interrogating fragments using a protein thermal shift assay

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    Protein thermal shift is a relatively rapid and inexpensive technique for the identification of low molecular weight compound interactions with protein targets. An increase in the melting temperature of the target protein in the presence of a test ligand is indicative of a promising ligand-protein interaction. Due to its simplicity, protein thermal shift is an attractive method for screening libraries and validating hits in drug discovery programs. The methodology has been used successfully in high throughput screens of small molecule libraries, and its application has been extended to report on protein-drug-like-fragment interactions. Here, we review how protein thermal shift has been employed recently in fragment-based drug discovery (FBDD) efforts, and highlight its application to protein-protein interaction targets. Multiple validation of fragment hits by independent means is paramount to ensure efficient and economical progress in a FBDD campaign. We discuss the applicability of thermal shift assays in this light, and discuss more generally what one does when orthogonal approaches disagree

    Fingerprinting the tertiary structure of electroadsorbed lysozyme at soft interfaces by electrostatic spray ionization mass spectrometry

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    Lysozyme can be electrochemically detected after adsorption at an electrified gel–water interface. Ex situ characterization by electrostatic spray ionization mass spectrometry provides insights into the interfacial detection mechanism by allowing changes to the tertiary structure of electroadsorbed lysozyme to be fingerprinted for the first time

    Influence of positional correlations on the propagation of waves in a complex medium with polydisperse resonant scatterers

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    We present experimental results on a model system for studying wave propagation in a complex medium exhibiting low frequency resonances. These experiments enable us to investigate a fundamental question that is relevant for many materials, such as metamaterials, where low-frequency scattering resonances strongly influence the effective medium properties. This question concerns the effect of correlations in the positions of the scatterers on the coupling between their resonances, and hence on wave transport through the medium. To examine this question experimentally, we measure the effective medium wave number of acoustic waves in a sample made of bubbles embedded in an elastic matrix over a frequency range that includes the resonance frequency of the bubbles. The effective medium is highly dispersive, showing peaks in the attenuation and the phase velocity as functions of the frequency, which cannot be accurately described using the Independent Scattering Approximation (ISA). This discrepancy may be explained by the effects of the positional correlations of the scatterers, which we show to be dependent on the size of the scatterers. We propose a self-consistent approach for taking this "polydisperse correlation" into account and show that our model better describes the experimental results than the ISA

    Anion Distribution, Structural Distortion, and Symmetry-Driven Optical Band Gap Bowing in Mixed Halide Cs₂SnX₆ Vacancy Ordered Double Perovskites

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    Mixed anion compounds in the Fm-3m vacancy ordered perovskite structure were synthesised and characterised experimentally and computationally with a focus on compounds where A = Cs+. Pure anion Cs2SnX6 compounds were formed with X = Cl, Br and I using a room temperature solution phase method. Mixed anion compounds were formed as solid solutions of Cs2SnCl6 and Cs2SnBr6 and a second series from Cs2SnBr6 and Cs2SnI6. Single phase structures formed across the entirety of both composition series, with no evidence of long range anion ordering observed by diffraction. A distortion of the cubic A2BX6 structure was identified in which the spacing of the BX6 octahedra changes to accommodate the A site cation without reduction of overall symmetry. Optical band gap values varied with anion composition between 4.89 eV in Cs2SnCl6 to 1.35 eV in Cs2SnI6, but proved highly non-linear with changes in composition. In mixed halide compounds it was found that lower energy optical transitions appeared that were not present in the pure halide compounds, and this could be attributed to lowering of the local symmetry within the tin halide octahedra. The electronic structure was characterised by photoemission spectroscopy, and Raman spectroscopy revealed vibrational modes in the mixed halide compounds that could be assigned to particular mixed halide octahedra. This analysis was used to determine the distribution of octahedra types in mixed anion compounds, which was found to be consistent with a near-random distribution of halide anions throughout the structure, although some deviations from random halide distribution were noted in mixed iodide-bromide compounds, where the larger iodide anions preferentially adopted trans configurations

    Device-to-device communications: a performance analysis in the context of social comparison-based relaying

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    Device-to-device (D2D) communications are recognized as a key enabler of future cellular networks which will help to drive improvements in spectral efficiency and assist with the offload of network traffic. Among the transmission modes of D2D communications are single-hop and relay assisted multi-hop transmission. Relay-assisted D2D communications will be essential when there is an extended distance between the source and destination or when the transmit power of D2D user equipments (UEs) is constrained below a certain level. Although a number of works on relay-assisted D2D communications have been presented in the literature, most of those assume that relay nodes cooperate unequivocally. In reality, this cannot be assumed since there is little incentive to cooperate without a guarantee of future reciprocal behavior. Cooperation is a social behavior that depends on various factors, such as peer comparison, incentives, the cost to the donor and the benefit to the recipient. To incorporate the social behavior of D2D relay nodes, we consider the decision to relay using the donation game based on social comparison and characterize the probability of cooperation in an evolutionary context. We then apply this within a stochastic geometric framework to evaluate the outage probability and transmission capacity of relay assisted D2D communications. Through numerical evaluations, we investigate the performance gap between the ideal case of 100% cooperation and practical scenarios with a lower cooperation probability. It shows that practical scenarios achieve lower transmission capacity and higher outage probability than idealistic network views which assume full cooperation. After a sufficient number of generations, however, the cooperation probability follows the natural rules of evolution and the transmission performance of practical scenarios approach that of the full cooperation case, indicating that all D2D relay nodes adopt the same dominant cooperative strategy based on social comparison, without the need for enforcement by an external authority

    Mercury Accumulation in Tree Rings: Observed Trends in Quantity and Isotopic Composition in Shenandoah National Park, Virginia

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    Recent studies have shown that mercury (Hg) concentrations in tree rings have the potential to archive historical Hg exposure from local, regional, and global sources. The southeastern United States has received elevated Hg deposition, yet no studies have evaluated tree ring Hg in this region. Here, we quantify Hg accumulation and isotopic composition in tree rings collected in Shenandoah National Park, Virginia. Cores were collected from three individuals of three tree species—white oak (Quercus alba), northern red oak (Quercus rubra), and pitch pine (Pinus rigida)—within the northern, central, and southern areas of the Park (n = 27 cores). The cores were analyzed for Hg content in 10‐year increments, with some cores dating back to the early 1800s. Overall, tree ring Hg concentrations (ranging from below detection to 4.4 ng/g) were similar to other studies and varied between species, with pitch pine having higher concentrations than the deciduous species. The most notable feature of the tree ring Hg time series was a peak that occurred during the 1930s through 1950s, coinciding with the use of Hg at a local industrial facility. Atmospheric modeling indicates that potential emissions from the plant likely had a stronger impact on the southern region of the Park, consistent with the latitudinal gradient in tree ring Hg concentrations. Mass‐dependent and mass‐independent fractionation of Hg isotopes suggests contributions from both regional anthropogenic and local industrial sources during this period. This study demonstrates the potential usefulness of tree ring dendrochemistry for identifying historical sources of atmospheric Hg exposure.Key PointsTree ring mercury levels in Shenandoah National Park, Virginia, were similar to those measured in other North American forestsTree ring mercury peaked during the 1930s to 1950s, coinciding with mercury use at an industrial facility near the southern end of the ParkMercury isotopes suggest a local source at this time, demonstrating the potential of dendrochemistry to identify historical sourcesPlain Language SummaryFor many years scientists have used tree rings to reconstruct past climate. Increasingly, tree rings are being used to document the historical exposure of trees to pollutants. In this study, we cored trees in Shenandoah National Park, Virginia, dated the tree rings, and then measured the amount of mercury stored within decadal core increments. We were surprised to find that mercury levels peaked in the 1930s to 1950s, even though global mercury emissions continued to rise throughout the past century, mostly as a by‐product of energy production. Our findings suggest that the trees were exposed to a local pollutant source during this earlier time period, perhaps from a nearby industrial plant that used mercury in the production of rayon. By examining the chemistry of wood within tree rings, we can get a clearer picture of when and where human activities have affected air pollution over recent centuries.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/153685/1/jgrg21576_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/153685/2/jgrg21576.pd
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