Computational Model for Human 3D Shape Perception From a Single Specular Image

In natural conditions the human visual system can estimate the 3D shape of specular objects even from a single image. Although previous studies suggested that the orientation field plays a key role for 3D shape perception from specular reflections, its computational plausibility, and possible mechanisms have not been investigated. In this study, to complement the orientation field information, we first add prior knowledge that objects are illuminated from above and utilize the vertical polarity of the intensity gradient. Then we construct an algorithm that incorporates these two image cues to estimate 3D shapes from a single specular image. We evaluated the algorithm with glossy and mirrored surfaces and found that 3D shapes can be recovered with a high correlation coefficient of around 0.8 with true surface shapes. Moreover, under a specific condition, the algorithm's errors resembled those made by human observers. These findings show that the combination of the orientation field and the vertical polarity of the intensity gradient is computationally sufficient and probably reproduces essential representations used in human shape perception from specular reflections

Swainsonine reduces 5-fluorouracil tolerance in the multistage resistance of colorectal cancer cell lines

<p>Abstract</p> <p>Background</p> <p>Drug resistance is a major problem in cancer chemotherapy. Acquisition of chemo-resistance not only reduces the effectiveness of drugs, but also promotes side effects and markedly reduces the patient's quality of life. However, a number of resistance mechanisms have been reported and are thought to be the reason for the difficulties in solving drug-resistance problems.</p> <p>Result</p> <p>To investigate the mechanisms of drug resistance, a set of cell lines with different levels of sensitivity and possessing different mechanisms of resistance to 5-fluorouracil (5-FU) was established from a colorectal cancer cell line. The expression of thymidylate synthase, orotic acid phosphoribosyltransferase and dihydropyrimidine dehydrogenase, which are well known to be related to drug resistance, differed among these cell lines, indicating that these cell lines acquired different resistance mechanisms. However, swainsonine, an inhibitor of N-glycan biosynthesis, reduced 5-FU-tolerance in all resistant cells, whereas the sensitivity of the parental cells was unchanged. Further analysis of the N-glycan profiles of all cell lines showed partial inhibition of biosynthesis and no cytotoxicity at the swainsonine dosage tested.</p> <p>Conclusion</p> <p>These observations suggest that N-linked oligosaccharides affect 5-FU resistance more widely than do drug-resistance related enzymes in colorectal cancer cells, and that the N-glycan could be a universal target for chemotherapy. Further, swainsonine may enhance the performance of chemotherapy by reducing tolerance.</p

Reversible phase transition in laser-shocked 3Y-TZP ceramics observed via nanosecond time-resolved X-ray diffraction

The high-pressure phase stability of the metastable tetragonal zirconia is still under debate. The transition dynamics of shocked Y2O3 (3 mol%) stabilized tetragonal zirconia ceramics under laser-shock compression has been directly studied using nanosecond time-resolved X-ray diffraction. The martensitic phase transformation to the monoclinic phase, which is the stable phase for pure zirconia at ambient pressure and room temperature, has been observed during compression at 5 GPa within 20 ns without any intermediates. This monoclinic phase reverts back to the tetragonal phase during pressure release. The results imply that the stabilization effect due to addition of Y2O3 is negated by the shear stress under compression.Comment: 11 pages, 4 figures, draf

Variants at HLA-A , HLA-C , and HLA-DQB1 Confer Risk of Psoriasis Vulgaris in Japanese

Psoriasis vulgaris (PsV) is an autoimmune disease of skin and joints with heterogeneity in epidemiologic and genetic landscapes of global populations. We conducted an initial genome-wide association study and a replication study of PsV in the Japanese population (606 PsV cases and 2,052 controls). We identified significant associations of the single nucleotide polymorphisms with PsV risk at TNFAIP3-interacting protein 1and the major histocompatibility complex region (P = 3.7 × 10−10 and 6.6 × 10−15, respectively). By updating the HLA imputation reference panel of Japanese (n = 908) to expand HLA gene coverage, we fine-mapped the HLA variants associated with PsV risk. Although we confirmed the PsV risk of HLA-C*06:02 (odds ratio = 6.36, P = 0.0015), its impact was relatively small compared with those in other populations due to rare allele frequency in Japanese (0.4% in controls). Alternatively, HLA-A*02:07, which corresponds to the cysteine residue at HLA-A amino acid position 99 (HLA-A Cys99), demonstrated the most significant association with PsV (odds ratio = 4.61, P = 1.2 × 10–10). In addition to HLA-A*02:07 and HLA-C*06:02, stepwise conditional analysis identified an independent PsV risk of HLA-DQβ1 Asp57 (odds ratio = 2.19, P = 1.9 × 10–6). Our PsV genome-wide association study in Japanese highlighted the genetic architecture of PsV, including the identification of HLA risk variants

A Rat-Based Preclinical Platform Facilitating Transcatheter Hepatic Arterial Infusion in Immunodeficient Rats With Liver Xenografts of Patient-Derived Pancreatic Ductal Adenocarcinoma

Liver metastases from pancreatic ductal adenocarcinoma (PDAC) are highly fatal. A rat-based patient-derived tumor xenograft (PDX) model is available for transcatheter therapy. This study aimed to create an immunodeficient rat model with liver xenografts of patient-derived primary PDAC and evaluate efficacy of hepatic arterial infusion chemotherapy with cisplatin in this model. Three patient-derived PDACs were transplanted into the livers of 21 rats each (totally, 63 rats), randomly assigned into hepatic arterial infusion, systemic venous infusion, and control groups (n = 7 each) four weeks post-implantation. Computed tomography evaluated tumor volumes before and four weeks after treatment. Post-euthanasia, resected tumor specimens underwent histopathological examination. A liver-implanted PDAC PDX rat model was established in all 63 rats, with first CT identifying all tumors. Four weeks post-treatment, arterial infusion groups exhibited significantly smaller tumor volumes than controls for all three tumors on second CT. Xenograft tumors histologically maintained adenocarcinoma features compared to original patient tumors. Ki67 expression was significantly lower in arterial infusion groups than in the other two for the three tumors, indicating reduced tumor growth in PDX rats. A liver-implanted PDAC PDX rat model was established as a rat-based preclinical platform. Arterial cisplatin infusion chemotherapy represents a potential therapy for PDAC liver metastasis

Gallbladder adenocarcinoma with human chorionic gonadotropin: a case report and review of literature

<p>Abstract</p> <p>Background</p> <p>The case of adenocarcinoma with human chorionic gonadtropin (HCG), primary in the male gallbladder, is extremely rare. A Medline search has shown only a few similar cases reported.</p> <p>Methods</p> <p>We herein describe a case of primary gallbladder adenocarcinoma associated by ectopic HCG positive tumor cells in a 79-year-old male.</p> <p>Results</p> <p>Pathological examination showed a mixture of moderately and poorly differentiated adenocarcinoma with ectopic HCG and placental alkaline phosphatase (PlAP) in tumor cells, though the increase of serum or urinary HCG secretion was not confirmed. The literatures were also reviewed.</p> <p>Conclusions</p> <p>A case of gallbladder cancer with ectopic HCG production is quite rare in the literature, though many similar cases in other site, especially in GI tract, are reported. Embryological consideration suggests the increased frequency of similar cases more than being thought now.</p

Synchronization of Circadian Per2 Rhythms and HSF1-BMAL1:CLOCK Interaction in Mouse Fibroblasts after Short-Term Heat Shock Pulse

Circadian rhythms are the general physiological processes of adaptation to daily environmental changes, such as the temperature cycle. A change in temperature is a resetting cue for mammalian circadian oscillators, which are possibly regulated by the heat shock (HS) pathway. The HS response (HSR) is a universal process that provides protection against stressful conditions, which promote protein-denaturation. Heat shock factor 1 (HSF1) is essential for HSR. In the study presented here, we investigated whether a short-term HS pulse can reset circadian rhythms. Circadian Per2 rhythm and HSF1-mediated gene expression were monitored by a real-time bioluminescence assay for mPer2 promoter-driven luciferase and HS element (HSE; HSF1-binding site)-driven luciferase activity, respectively. By an optimal duration HS pulse (43°C for approximately 30 minutes), circadian Per2 rhythm was observed in the whole mouse fibroblast culture, probably indicating the synchronization of the phases of each cell. This rhythm was preceded by an acute elevation in mPer2 and HSF1-mediated gene expression. Mutations in the two predicted HSE sites adjacent (one of them proximally) to the E-box in the mPer2 promoter dramatically abolished circadian mPer2 rhythm. Circadian Per2 gene/protein expression was not observed in HSF1-deficient cells. These findings demonstrate that HSF1 is essential to the synchronization of circadian rhythms by the HS pulse. Importantly, the interaction between HSF1 and BMAL1:CLOCK heterodimer, a central circadian transcription factor, was observed after the HS pulse. These findings reveal that even a short-term HS pulse can reset circadian rhythms and cause the HSF1-BMAL1:CLOCK interaction, suggesting the pivotal role of crosstalk between the mammalian circadian and HSR systems

Lack of association between the CARD10 rs6000782 polymorphism and type 1 autoimmune hepatitis in a Japanese population

Background: Previous genome-wide association studies have evaluated the impact of common genetic variants and identified several non-HLA risk loci associated with autoimmune liver diseases. More recent genome-wide association studies and replication analyses reported an association between variants of the CARD10 polymorphism rs6000782 and risk of type 1 autoimmune hepatitis (AIH). In this case-control study, we genotyped 326 Japanese AIH patients and 214 control subjects. Results: Genomic DNA from 540 individuals of Japanese origin, including 326 patients with type-1 AIH and 214 healthy controls, was analyzed for two single nucleotide polymorphisms (SNPs) in the CARD10 gene. We selected CARD10 rs6000782 SNPs and genotyped these using PCR-RFLP method and direct sequencing. The Chi square test revealed that the rs6000782 variant alle (c) was not associated with the susceptibility for AIH in a Japanese population [p = 0.376, odds ratio (OR) 1.271, 95 % confidence interval (CI) 0.747-2.161] in an allele model. Our data also showed that CARD10 rs6000782 variants were not associated with AIH or with the clinical parameters of AIH. Conclusions: In this study we examined an association between rs6000782 SNPs in the CARD10 gene and type-1 AIH. Results showed no significant association of rs62000782 with type-1 AIH in a Japanese population. This study demonstrated no association between CARD10 rs6000782 variants and AIH in a Japanese population

Habitat preferences of Peromyscus leucopus, Blarina brevicauda and Glaucomys volans in Northern Lower Michigan

ABSTRACT I assessed the influence of microhabitat variables on the abundance and spatial structure of small mammals across three types of forest, deciduous (Colonial Point), hardwood-pine (the Burn Plots) and cedar swamp (Reese’s Swamp), at the University of Michigan Biological Station (UMBS), in Cheboygan County, northern lower Michigan. Traps have been placed in these forests twice a year for 18 years since 1989 by Professor Philip Myers, and I based my study on his trapping records. I created a four by four meter square plot centered on each trap station and measured habitat variables on each plot in late September and early October 2006. Over 2,000 captures of sixteen small mammal species were recorded in 6,480 trapnights over eighteen years. Four species were commonly captured: eastern chipmunk (Tamias striatus), white footed mouse (Peromyscus leucopus); short-tailed shrew (Blarina brevicauda); and southern flying squirrel (Glaucomys volans). I eliminated Tamias because its trapping records were clearly strongly influenced by daily weather, and I focused on the remaining three. For P. leucopus and B. brevicauda, I included trapping records for only the most recent four years, as those species are short-lived, and ecological variables such as woody debris and ground cover change from year after year. For G. volans, which is longer-lived, I used all 18 years of trapping records. Also, G. volans is much less common than P. leucopus or B. brevicauda, and sample sizes were too small to analyze unless all years were included. The preferences of each species across three transects located in the different forests were evaluated by statistical methods including Poisson regression models, principal component analysis, analysis of variance and analysis of covariance. The spatial structures of the populations of each species were examined by spatial autocorrelation analysis using Moran’s I. ii i In deciduous and pine-hardwood forests, white footed mice were found to be habitat generalists. In the cedar swamp, on the other hand, they were likely to be habitat specialists limited by food availability and predation risks. A relatively high spatial autocorrelation of the number of captures/station was found only for P. leucopus in the hardwood forest in the fall. Spatial distribution of food in patches over the series of adjacent trap stations may explain for this pattern, but none of my measurements test this hypothesis. Short-tailed shrews preferred deciduous forest that is characterized by many trees, much leaf litter and large variety of ground cover species. In the cedar swamp, they preferred sites with large trees, moss/lichen cover on the ground, much woody debris and many snags. Limiting factors for them were likely to be soil moisture and food availability. Most southern flying squirrels were found in the deciduous forest, where they were not habitat selective. In the pine-hardwood forest, G. volans preferred sites with greater diversity of trees and larger trees. No preference for snags was found. In the cedar swamp, no G. volans was found over the eighteen year study.Master of ScienceSchool of Natural Resources and EnvironmentUniversity of Michiganhttp://deepblue.lib.umich.edu/bitstream/2027.42/55334/1/Takeaki Sato_Thesis final draft 07232007.pd