Adaptive Ising Model and Bacterial Chemotactic Receptor Network

We present a so-called adaptive Ising model (AIM) to provide a unifying explanation for sensitivity and perfect adaptation in bacterial chemotactic signalling, based on coupling among receptor dimers. In an AIM, an external field, representing ligand binding, is randomly applied to a fraction of spins, representing the states of the receptor dimers, and there is a delayed negative feedback from the spin value on the local field. This model is solved in an adiabatic approach. If the feedback is slow and weak enough, as indeed in chemotactic signalling, the system evolves through quasi-equilibrium states and the ``magnetization'', representing the signal, always attenuates towards zero and is always sensitive to a subsequent stimulus.Comment: revtex, final version to appear in Europhysics Letter

Geometries and energetics of methanol–ethanol clusters: a VUV laser/time-of-flight mass spectrometry and density functional theory study

Hydrogen-bonded clusters, formed above liquid methanol (Me) and ethanol (Et) mixtures of various compositions, were entrained in a supersonic jet and probed using 118 nm vacuum ultraviolet (VUV) laser single-photon ionization/time-of-flight mass spectrometry. The spectra are dominated by protonated cluster ions, formed by ionizing hydrogen-bonded MemEtn neutrals, m = 0–4, n = 0–3, and m + n = 2–5. The structures and energetics of the neutral and ionic species were investigated using both the all-atom optimized potential for liquid state, OPLS-AA, and the density functional (DFT) calculations. The energetic factors affecting the observed cluster distributions were examined. Calculations indicate that the large change in binding energy going from trimer to tetramer can be attributed more to pair-wise interactions than to cooperativity effects

A Two-Dimensional CA Traffic Model with Dynamic Route Choices Between Residence and Workplace

The Biham, Middleton and Levine (BML) model is extended to describe dynamic route choices between the residence and workplace in cities. The traffic dynamic in the city with a single workplace is studied from the velocity diagram, arrival time probability distribution, destination arrival rate and convergence time. The city with double workplaces is also investigated to compared with a single workplace within the framework of four modes of urban growth. The transitional region is found in the velocity diagrams where the system undergoes a continuous transition from a moving phase to a completely jamming phase. We perform a finite-size scaling analysis of the critical density from a statistical point of view and the order parameter of this jamming transition is estimated. It is also found that statistical properties of urban traffic are greatly influenced by the urban area, workplace area and urban layout.Comment: 18 pages, 13 figure

Exotic Topological States with Raman-Induced Spin-Orbit Coupling

We propose a simple experimental scheme to realize simultaneously the one-dimensional spin-orbit coupling and the staggered spin-flip in ultracold pseudospin-$1/2$ atomic Fermi gases trapped in square optical lattices. In the absence of interspecies interactions, the system supports gapped Chern insulators and gapless topological semimetal states. By turning on the $s$-wave interactions, a rich variety of gapped and gapless inhomogeneous topological superfluids can emerge. In particular, a gapped topological Fulde-Ferrell superfluid, in which the chiral edge states at opposite boundaries possess the same chirality, is predicted.Comment: 11 pages, 6 figure

Geochemistry of reduced inorganic sulfur, reactive iron, and organic carbon in fluvial and marine surface sediment in the Laizhou Bay region, China

Understanding the geochemical cycling of sulfur in sediments is important because it can have implications for both modern environments (e.g., deterioration of water quality) and interpretation of the ancient past (e.g., sediment C/S ratios can be used as indicators of palaeodepositional environment). This study investigates the geochemical characteristics of sulfur, iron, and organic carbon in fluvial and coastal surface sediments of the Laizhou Bay region, China. A total of 63 sediment samples were taken across the whole Laizhou Bay marine region and the 14 major tidal rivers draining into it. Acid volatile sulfur, chromium (II)-reducible sulfur and elemental sulfur, total organic carbon, and total nitrogen were present in higher concentrations in the fluvial sediment than in the marine sediment of Laizhou Bay. The composition of reduced inorganic sulfur in surface sediments was dominated by acid volatile sulfur and chromium (II)-reducible sulfur. In fluvial sediments, sulfate reduction and formation of reduced inorganic sulfur were controlled by TOC and reactive iron synchronously. High C/S ratios in the marine sediments indicate that the diagenetic processes in Laizhou Bay have been affected by rapid deposition of sediment from the Yellow River in recent decades