73 research outputs found
Island nucleation in the presence of step edge barriers: Theory and applications
We develop a theory of nucleation on top of two-dimensional islands bordered
by steps with an additional energy barrier for descending atoms.
The theory is based on the concept of the residence time of an adatom on the
island,and yields an expression for the nucleation rate which becomes exact in
the limit of strong step edge barriers. This expression differs qualitatively
and quantitatively from that obtained using the conventional rate equation
approach to nucleation [J. Tersoff et al., Phys. Rev. Lett.72, 266 (1994)]. We
argue that rate equation theory fails because nucleation is dominated by the
rare instances when two atoms are present on the island simultaneously. The
theory is applied to two distinct problems: The onset of second layer
nucleation in submonolayer growth, and the distribution of the sizes of top
terraces of multilayer mounds under conditions of strong step edge barriers.
Application to homoepitaxial growth on Pt(111) yields the estimate eV for the additional energy barrier at CO-decorated steps.Comment: 13 pages, 3 figure
Leiomyosarcoma presenting as a spontaneously ruptured renal tumor-case report
BACKGROUND: Ruptured renal neoplasms can be a catastrophic clinical presentation. Angiomyolipoma is the commonest renal tumor which presents in this fashion. Renal sarcomas are rare renal neoplasms. Renal leiomyosarcomas are the most common histological subtype of renal sarcomas, accounting for approximately 50–60% of the reported cases. These tumors are usually peripherally located and appear to arise from either the renal capsule or smooth muscle tissue in the renal pelvic wall. CASE PRESENTATION: A 70 years old male, with hypertension and ischemic disease, developed acute left flank pain. The general physician evaluated this using ultrasound, which showed a solid left renal mass. Two weeks later, he presented in the emergency room in a state of shock with a palpable flank mass. CT scan of the abdomen showed a large heterogeneous mass lesion in the left perinephric space with minimal post contrast enhancement. Per-operatively, large retroperitoneal hematoma was found within Gerota's fascia along with spleen plastered to the upper limit of hematoma. Nephrectomy and splenectomy were performed. Postoperative course was uneventful and patient was discharged on the 10(th )post-operative day. Histopathological evaluation of the specimen showed high-grade leiomyosarcoma CONCLUSIONS: Spontaneous rupture of renal neoplasm is a rare clinical presentation. Angiomyolipoma is the commonest cause of spontaneous rupture of the kidney. Presentation of a leimyosarcoma as a ruptured renal neoplasm has not been previously reported in the English literature
The process of irreversible nucleation in multilayer growth. II. Exact results in one and two dimensions
We study irreversible dimer nucleation on top of terraces during epitaxial
growth in one and two dimensions, for all values of the step-edge barrier. The
problem is solved exactly by transforming it into a first passage problem for a
random walker in a higher-dimensional space. The spatial distribution of
nucleation events is shown to differ markedly from the mean-field estimate
except in the limit of very weak step-edge barriers. The nucleation rate is
computed exactly, including numerical prefactors.Comment: 22 pages, 10 figures. To appear in Phys. Rev.
Spatio-temporal distribution of nucleation events during crystal growth
We consider irreversible second-layer nucleation that occurs when two adatoms
on a terrace meet. We solve the problem analytically in one dimension for zero
and infinite step-edge barriers, and numerically for any value of the barriers
in one and two dimensions. For large barriers, the spatial distribution of
nucleation events strongly differs from , where is the
stationary adatom density in the presence of a constant flux. The probability
that nucleation occurs at time after the deposition of the second
adatom, decays for short time as a power law [] in and
logarithmically [] in ; for long time it decays
exponentially. Theories of the nucleation rate based on the assumption
that it is proportional to are shown to overestimate by a
factor proportional to the number of times an adatom diffusing on the terrace
visits an already visited lattice site.Comment: 4 pages, 3 figures; accepted for publication on PR
Irreversible nucleation in molecular beam epitaxy: From theory to experiments
Recently, the nucleation rate on top of a terrace during the irreversible
growth of a crystal surface by MBE has been determined exactly. In this paper
we go beyond the standard model usually employed to study the nucleation
process, and we analyze the qualitative and quantitative consequences of two
important additional physical ingredients: the nonuniformity of the
Ehrlich-Schwoebel barrier at the step-edge, because of the existence of kinks,
and the steering effects, due to the interaction between the atoms of the flux
and the substrate. We apply our results to typical experiments of second layer
nucleation.Comment: 11 pages. Table I corrected and one appendix added. To be published
in Phys. Rev. B (scheduled issue: 15 February 2003
The process of irreversible nucleation in multilayer growth. I. Failure of the mean-field approach
The formation of stable dimers on top of terraces during epitaxial growth is
investigated in detail. In this paper we focus on mean-field theory, the
standard approach to study nucleation. Such theory is shown to be unsuitable
for the present problem, because it is equivalent to considering adatoms as
independent diffusing particles. This leads to an overestimate of the correct
nucleation rate by a factor N, which has a direct physical meaning: in average,
a visited lattice site is visited N times by a diffusing adatom. The dependence
of N on the size of the terrace and on the strength of step-edge barriers is
derived from well known results for random walks. The spatial distribution of
nucleation events is shown to be different from the mean-field prediction, for
the same physical reason. In the following paper we develop an exact treatment
of the problem.Comment: 19 pages, 3 figures. To appear in Phys. Rev.
Crater formation by fast ions: comparison of experiment with Molecular Dynamics simulations
An incident fast ion in the electronic stopping regime produces a track of
excitations which can lead to particle ejection and cratering. Molecular
Dynamics simulations of the evolution of the deposited energy were used to
study the resulting crater morphology as a function of the excitation density
in a cylindrical track for large angle of incidence with respect to the surface
normal. Surprisingly, the overall behavior is shown to be similar to that seen
in the experimental data for crater formation in polymers. However, the
simulations give greater insight into the cratering process. The threshold for
crater formation occurs when the excitation density approaches the cohesive
energy density, and a crater rim is formed at about six times that energy
density. The crater length scales roughly as the square root of the electronic
stopping power, and the crater width and depth seem to saturate for the largest
energy densities considered here. The number of ejected particles, the
sputtering yield, is shown to be much smaller than simple estimates based on
crater size unless the full crater morphology is considered. Therefore, crater
size can not easily be used to estimate the sputtering yield.Comment: LaTeX, 7 pages, 5 EPS figures. For related figures/movies, see:
http://dirac.ms.virginia.edu/~emb3t/craters/craters.html New version uploaded
5/16/01, with minor text changes + new figure
Signature of multilayer growth of 2D layered Bi2Se3 through heteroatom-assisted step-edge barrier reduction
During growth of two-dimensional (2D) materials, abrupt growth of multilayers is practically unavoidable even in the case of well-controlled growth. In epitaxial growth of a quintuple-layered Bi2Se3 film, we observe that the multilayer growth pattern deduced from in situ x-ray diffraction implies nontrivial interlayer diffusion process. Here we find that an intriguing diffusion process occurs at step edges where a slowly downward-diffusing Se adatom having a high step-edge barrier interacts with a Bi adatom pre-existing at step edges. The Se???Bi interaction lowers the high step-edge barrier of Se adatoms. This drastic reduction of the overall step-edge barrier and hence increased interlayer diffusion modifies the overall growth significantly. Thus, a step-edge barrier reduction mechanism assisted by hetero adatom???adatom interaction could be fairly general in multilayer growth of 2D heteroatomic materials
The N-Myc Down Regulated Gene1 (NDRG1) Is a Rab4a Effector Involved in Vesicular Recycling of E-Cadherin
Cell to cell adhesion is mediated by adhesion molecules present on the cell surface. Downregulation of molecules that form the adhesion complex is a characteristic of metastatic cancer cells. Downregulation of the N-myc down regulated gene1 (NDRG1) increases prostate and breast metastasis. The exact function of NDRG1 is not known. Here by using live cell confocal microscopy and in vitro reconstitution, we report that NDRG1 is involved in recycling the adhesion molecule E-cadherin thereby stabilizing it. Evidence is provided that NDRG1 recruits on recycling endosomes in the Trans Golgi network by binding to phosphotidylinositol 4-phosphate and interacts with membrane bound Rab4aGTPase. NDRG1 specifically interacts with constitutively active Rab4aQ67L mutant protein and not with GDP-bound Rab4aS22N mutant proving NDRG1 as a novel Rab4a effector. Transferrin recycling experiments reveals NDRG1 colocalizes with transferrin during the recycling phase. NDRG1 alters the kinetics of transferrin recycling in cells. NDRG1 knockdown cells show a delay in recycling transferrin, conversely NDRG1 overexpressing cells reveal an increase in rate of transferrin recycling. This novel finding of NDRG1 as a recycling protein involved with recycling of E-cadherin will aid in understanding NDRG1 role as a metastasis suppressor protein
Genetic diversity and demographic instability in Riftia pachyptila tubeworms from eastern Pacific hydrothermal vents
<p>Abstract</p> <p>Background</p> <p>Deep-sea hydrothermal vent animals occupy patchy and ephemeral habitats supported by chemosynthetic primary production. Volcanic and tectonic activities controlling the turnover of these habitats contribute to demographic instability that erodes genetic variation within and among colonies of these animals. We examined DNA sequences from one mitochondrial and three nuclear gene loci to assess genetic diversity in the siboglinid tubeworm, <it>Riftia pachyptila</it>, a widely distributed constituent of vents along the East Pacific Rise and Galápagos Rift.</p> <p>Results</p> <p>Genetic differentiation (<it>F</it><sub><it>ST</it></sub>) among populations increased with geographical distances, as expected under a linear stepping-stone model of dispersal. Low levels of DNA sequence diversity occurred at all four loci, allowing us to exclude the hypothesis that an idiosyncratic selective sweep eliminated mitochondrial diversity alone. Total gene diversity declined with tectonic spreading rates. The southernmost populations, which are subjected to superfast spreading rates and high probabilities of extinction, are relatively homogenous genetically.</p> <p>Conclusions</p> <p>Compared to other vent species, DNA sequence diversity is extremely low in <it>R. pachyptila</it>. Though its dispersal abilities appear to be effective, the low diversity, particularly in southern hemisphere populations, is consistent with frequent local extinction and (re)colonization events.</p
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