38 research outputs found

    Human cytomegalovirus genomes sequenced directly from clinical material: variation, multiple-strain infection, recombination and gene loss

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    The genomic characteristics of human cytomegalovirus (HCMV) strains sequenced directly from clinical pathology samples were investigated, focusing on variation, multiple-strain infection, recombination, and gene loss. A total of 207 datasets generated in this and previous studies using target enrichment and high-throughput sequencing were analyzed, in the process enabling the determination of genome sequences for 91 strains. Key findings were that (i) it is important to monitor the quality of sequencing libraries in investigating variation; (ii) many recombinant strains have been transmitted during HCMV evolution, and some have apparently survived for thousands of years without further recombination; (iii) mutants with nonfunctional genes (pseudogenes) have been circulating and recombining for long periods and can cause congenital infection and resulting clinical sequelae; and (iv) intrahost variation in single-strain infections is much less than that in multiple-strain infections. Future population-based studies are likely to continue illuminating the evolution, epidemiology, and pathogenesis of HCMV

    Re‐weighing the 5% tagging recommendation: assessing the potential impacts of tags on the behaviour and body condition of bats

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    Considerable advances and breakthroughs in wildlife tracking technology have occurred in recent years, allowing researchers to gain insights into the movements and behaviours of a broad range of animals. Considering the accessibility and increase in use of tracking devices in wildlife studies, it is important to better understand the effects on these on animals. Our endeavour revisits a guideline established in 1988, which proposes that bats may encounter body condition or health problems and alter their behaviour when carrying tags weighing more than 5% of their body mass. Through a systematic literature review, we conducted a meta‐analysis to identify the impacts of tags on bats, including 367 papers from 1976 to 2023 that discussed, mentioned, employed, or quantified tagging of bats. We noted that the proportion of studies exceeding the 5% rule has not changed in recent years. However, the impact of tags was quantified in few studies for behaviour (n = 7) and body condition (n = 10) of bats. We were unable to assess whether tags weighing less or more than 5% of the bat's body mass impacted bats, but our meta‐analysis did identify that tags, irrespective of mass, affect the behaviour and body condition of bats. Although the overall magnitude of measured effects of tags on bats was small, progress has been made to advance our understanding of tag mass on bats. Naturally, there is a bias in reporting of significant results, illustrating the need of reporting results when there is no apparent effect of tags on bats. Our findings highlight the need for rigorous reporting of behaviour and body condition data associated with tagging of animals and illustrate the importance for studies comparing how tracking devices of different dimensions and masses may impact bat species to ensure research meets rigorous ethical standards

    Thermal design, optimization and additive manufacturing of ceramic regular structures to maximize the radiative heat transfer

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    The present study is focused on the application of a ceramic tubular high temperature heat exchanger with engineered cellular architectures. Thermal design and optimization to maximise the radiative heat transfer has been investigated both experimentally and computationally. Numerical models were designed involving various arrangements of cells and their different sizes (while the total heat transfer area remains constant). They were 3D-printed by Stereolithography (SLA) and subsequently sintered. Heat transfer tests were performed both with a high temperature pressure drop test and by CFD simulations on 2D and 3D models. The computational results agree with the experimental data. We found that radial heat transfer in a tube increases by 160% to 280%, if a ceramic lattice is inserted, in respect of an empty tube. Moreover, the arrangement of cells and their size significantly influences the radiative heat transfer showing (for a given array) its top performances above 773 K. Geometries with large cells outside and small cells inside in the radial direction allow radiation to penetrate better through the core of the porous body. With this engineered ceramic lattices it is possible to reduce the tube length by one third to obtain more compact heat exchangers than an empty tubular solution

    Gln145Met/Leu changes in HIV-1 RT confer resistance to nucleoside and non-nucleoside analogs and impair virus replication.

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    The frequencies of multidrug resistance-associated mutations at codons 145, 151, and 69 of the human immunodeficiency virus (HIV) reverse transcriptase (RT) gene in strains from a group of 3,595 highly active antiretroviral therapy (HAART)-experienced patients were 0.22, 2.36, and 0.86%, respectively. Several amino acid substitutions different from the recently reported Gln145Met change (S. Paolucci, F. Baldanti, M. Tinelli, G. Maga, and G. Gerna, AIDS 17:924-927, 2003) were detected at position 145. Thus, amino acid substitutions selected at position 145 were introduced into the wild-type HIV type 1 (HIV-1) RT gene by site-directed mutagenesis, and recombinant HIV strains were assayed for their drug susceptibilities. Only Met and Leu substitutions at position 145 of the HIV-1 RT conferred multidrug resistance, while other amino acid changes did not. Lower levels of replication of the Gln145Met recombinant strain compared with those of both Gln151Met and wild-type recombinant strains were observed. In in vitro inhibition assays, expression and purification of the recombinant Gln145Met HIV-1 RT revealed a strong loss of catalytic efficiency of the mutated enzyme, as well as significant resistance to both zidovudine and efavirenz. Specific amino acid substitutions in the HIV RT nucleotide-binding pocket might affect both antiretroviral drug recognition and binding and decrease the level of virus replication, possibly by interfering with the enzyme activity. This finding may explain the lower frequency of Gln145Met/Leu mutations observed compared with the frequencies of Gln151Met/Leu mutations and the insertion at position 69 in HAART-experienced patients
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