117 research outputs found
Spatially explicit approach to estimation of total population abundance in field surveys.
Population abundance is fundamental in ecology and conservation biology, and provides essential information for predicting population dynamics and implementing conservation actions. While a range of approaches have been proposed to estimate population abundance based on existing data, data deficiency is ubiquitous. When information is deficient, a population estimation will rely on labor intensive field surveys. Typically, time is one of the critical constraints in conservation, and management decisions must often be made quickly under a data deficient situation. Hence, it is important to acquire a theoretical justification for survey methods to meet a required estimation precision. There is no such theory available in a spatially explicit context, while spatial considerations are critical to any field survey. Here, we develop a spatially explicit theory for population estimation that allows us to examine the estimation precision under different survey designs and individual distribution patterns (e.g. random/clustered sampling and individual distribution). We demonstrate that clustered sampling decreases the estimation precision when individuals form clusters, while sampling designs do not affect the estimation accuracy when individuals are distributed randomly. Regardless of individual distribution, the estimation precision becomes higher with increasing total population abundance and the sampled fraction. These insights provide theoretical bases for efficient field survey designs in information deficiency situations
Enhanced collectivity in 74Ni
The neutron-rich nucleus 74Ni was studied with inverse-kinematics inelastic
proton scattering using a 74Ni radioactive beam incident on a liquid hydrogen
targetat a center-of-mass energy of 80 MeV. From the measured de-excitation
gamma-rays, the population of the first 2+ state was quantified. The
angle-integrated excitation cross section was determined to be 14(4) mb. A
deformation length of delta = 1.04(16) fm was extracted in comparison with
distorted wave theory, which suggests that the enhancement of collectivity
established for 70Ni continues up to 74Ni. A comparison with results of shell
model and quasi-particle random phase approximation calculations indicates that
the magic character of Z = 28 or N = 50 is weakened in 74Ni
Metal-Insulator oscillations in a Two-dimensional Electron-Hole system
The electrical transport properties of a bipolar InAs/GaSb system have been
studied in magnetic field. The resistivity oscillates between insulating and
metallic behaviour while the quantum Hall effect shows a digital character
oscillating from 0 to 1 conducatance quantum e^2/h. The insulating behaviour is
attributed to the formation of a total energy gap in the system. A novel looped
edge state picture is proposed associated with the appearance of a voltage
between Hall probes which is symmetric on magnetic field reversal.Comment: 4 pages, 5 Postscript figures: revised versio
Field-induced polarisation of Dirac valleys in bismuth
Electrons are offered a valley degree of freedom in presence of particular
lattice structures. Manipulating valley degeneracy is the subject matter of an
emerging field of investigation, mostly focused on charge transport in
graphene. In bulk bismuth, electrons are known to present a threefold valley
degeneracy and a Dirac dispersion in each valley. Here we show that because of
their huge in-plane mass anisotropy, a flow of Dirac electrons along the
trigonal axis is extremely sensitive to the orientation of in-plane magnetic
field. Thus, a rotatable magnetic field can be used as a valley valve to tune
the contribution of each valley to the total conductivity. According to our
measurements, charge conductivity by carriers of a single valley can exceed
four-fifth of the total conductivity in a wide range of temperature and
magnetic field. At high temperature and low magnetic field, the three valleys
are interchangeable and the three-fold symmetry of the underlying lattice is
respected. As the temperature lowers and/or the magnetic field increases, this
symmetry is spontaneously lost. The latter may be an experimental manifestation
of the recently proposed valley-nematic Fermi liquid state.Comment: 14 pages + 5 pages of supplementary information; a slightly modified
version will appear as an article in Nature physic
Nuclear Alpha-Particle Condensates
The -particle condensate in nuclei is a novel state described by a
product state of 's, all with their c.o.m. in the lowest 0S orbit. We
demonstrate that a typical -particle condensate is the Hoyle state
( MeV, state in C), which plays a crucial role for
the synthesis of C in the universe. The influence of antisymmentrization
in the Hoyle state on the bosonic character of the particle is
discussed in detail. It is shown to be weak. The bosonic aspects in the Hoyle
state, therefore, are predominant. It is conjectured that -particle
condensate states also exist in heavier nuclei, like O,
Ne, etc. For instance the state of O at MeV
is identified from a theoretical analysis as being a strong candidate of a
condensate. The calculated small width (34 keV) of ,
consistent with data, lends credit to the existence of heavier Hoyle-analogue
states. In non-self-conjugated nuclei such as B and C, we discuss
candidates for the product states of clusters, composed of 's,
triton's, and neutrons etc. The relationship of -particle condensation
in finite nuclei to quartetting in symmetric nuclear matter is investigated
with the help of an in-medium modified four-nucleon equation. A nonlinear order
parameter equation for quartet condensation is derived and solved for
particle condensation in infinite nuclear matter. The strong qualitative
difference with the pairing case is pointed out.Comment: 71 pages, 41 figures, review article, to be published in "Cluster in
Nuclei (Lecture Notes in Physics) - Vol.2 -", ed. by C. Beck,
(Springer-Verlag, Berlin, 2011
A theory for ecological survey methods to map individual distributions
Spatially explicit approaches are widely recommended for ecosystem management. The quality of the data, such as presence/absence or habitat maps, affects the management actions recommended and is, therefore, key to management success. However, available data are often biased and incomplete. Previous studies have advanced ways to resolve data bias and missing data, but questions remain about how we design ecological surveys to develop a dataset through field surveys. Ecological surveys may have multiple spatial scales, including the spatial extent of the target ecosystem (observation window), the resolution for mapping individual distributions (mapping unit), and the survey area within each mapping unit (sampling unit). We developed an ecological survey method for mapping individual distributions by applying spatially explicit stochastic models. We used spatial point processes to describe individual spatial placements using either random or clustering processes. We then designed ecological surveys with different spatial scales and individual detectability. We found that the choice of mapping unit affected the presence mapped fraction, and the fraction of the total individuals covered by the presence mapped patches. Tradeoffs were found between these quantities and the map resolution, associated with equivalent asymptotic behaviors for both metrics at sufficiently small and large mapping unit scales. Our approach enabled consideration of the effect of multiple spatial scales in surveys, and estimation of the survey outcomes such as the presence mapped fraction and the number of individuals situated in the presence detected units. The developed theory may facilitate management decision-making and inform the design of monitoring and data gathering
Gradient Descent Optimization in Gene Regulatory Pathways
BACKGROUND: Gene Regulatory Networks (GRNs) have become a major focus of interest in recent years. Elucidating the architecture and dynamics of large scale gene regulatory networks is an important goal in systems biology. The knowledge of the gene regulatory networks further gives insights about gene regulatory pathways. This information leads to many potential applications in medicine and molecular biology, examples of which are identification of metabolic pathways, complex genetic diseases, drug discovery and toxicology analysis. High-throughput technologies allow studying various aspects of gene regulatory networks on a genome-wide scale and we will discuss recent advances as well as limitations and future challenges for gene network modeling. Novel approaches are needed to both infer the causal genes and generate hypothesis on the underlying regulatory mechanisms. METHODOLOGY: In the present article, we introduce a new method for identifying a set of optimal gene regulatory pathways by using structural equations as a tool for modeling gene regulatory networks. The method, first of all, generates data on reaction flows in a pathway. A set of constraints is formulated incorporating weighting coefficients. Finally the gene regulatory pathways are obtained through optimization of an objective function with respect to these weighting coefficients. The effectiveness of the present method is successfully tested on ten gene regulatory networks existing in the literature. A comparative study with the existing extreme pathway analysis also forms a part of this investigation. The results compare favorably with earlier experimental results. The validated pathways point to a combination of previously documented and novel findings. CONCLUSIONS: We show that our method can correctly identify the causal genes and effectively output experimentally verified pathways. The present method has been successful in deriving the optimal regulatory pathways for all the regulatory networks considered. The biological significance and applicability of the optimal pathways has also been discussed. Finally the usefulness of the present method on genetic engineering is depicted with an example
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