452 research outputs found

    A steepest descent calculation of RNA pseudoknots

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    We enumerate possible topologies of pseudoknots in single-stranded RNA molecules. We use a steepest-descent approximation in the large N matrix field theory, and a Feynman diagram formalism to describe the resulting pseudoknot structure

    Observations of current rings in the Antarctic Zone at Drake Passage

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    Time series of current velocity and temperature from several depths at a site near the center of Drake Passage show features that can plausibly be interpreted as current rings. Between June 1975 and January 1976, five cyclonic rings from the Continental Water Boundary and one anticyclonic ring from the Polar Front passed over the site. The diameters of the rings varied from 30 km to 130 km, and all of them extended vertically to a depth of at least 2500 m. The rings exhibited maximum spin velocities of about 20 cm sec−1 at 1000 m depth and 10 cm sec−1 at 2500 m. Their translatory motion, which was toward the north at about 4 cm sec−1, contained a westward component relative to the ambient flow. The magnitude of the westward component suggests that it may have resulted from an interaction between rings and the sea floor, which slopes downward to the northeast at the mooring site. The total available mechanical energy of the rings (kinetic plus potential) varied from 6.2 × 1013 j in the smallest ring to 9.9 × 1014 in the largest. The available heat, relative to the Antarctic Zone, was several orders of magnitude larger: −3.0 × 1017 j for the smallest ring and −3.6 × 1018 j for the largest. The numbers indicate that current rings may play an important role in dissipating the kinetic energy of the circumpolar fronts and that they may be responsible for a significant poleward flux of heat in the Southern Ocean

    Effects of tidal-forcing variations on tidal properties along a narrow convergent estuary

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    A 1D analytical framework is implemented in a narrow convergent estuary that is 78 km in length (the Guadiana, Southern Iberia) to evaluate the tidal dynamics along the channel, including the effects of neap-spring amplitude variations at the mouth. The close match between the observations (damping from the mouth to ∼ 30 km, shoaling upstream) and outputs from semi-closed channel solutions indicates that the M2 tide is reflected at the estuary head. The model is used to determine the contribution of reflection to the dynamics of the propagating wave. This contribution is mainly confined to the upper one third of the estuary. The relatively constant mean wave height along the channel (< 10% variations) partly results from reflection effects that also modify significantly the wave celerity and the phase difference between tidal velocity and elevation (contradicting the definition of an “ideal” estuary). Furthermore, from the mouth to ∼ 50 km, the variable friction experienced by the incident wave at neap and spring tides produces wave shoaling and damping, respectively. As a result, the wave celerity is largest at neap tide along this lower reach, although the mean water level is highest in spring. Overall, the presented analytical framework is useful for describing the main tidal properties along estuaries considering various forcings (amplitude, period) at the estuary mouth and the proposed method could be applicable to other estuaries with small tidal amplitude to depth ratio and negligible river discharge.info:eu-repo/semantics/publishedVersio
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