3,784 research outputs found
Cooperative protein transport in cellular organelles
Compartmentalization into biochemically distinct organelles constantly
exchanging material is one of the hallmarks of eukaryotic cells. In the most
naive picture of inter-organelle transport driven by concentration gradients,
concentration differences between organelles should relax. We determine the
conditions under which cooperative transport, i.e. based on molecular
recognition, allows for the existence and maintenance of distinct organelle
identities. Cooperative transport is also shown to control the flux of material
transiting through a compartmentalized system, dramatically increasing the
transit time under high incoming flux. By including chemical processing of the
transported species, we show that this property provides a strong functional
advantage to a system responsible for protein maturation and sorting.Comment: 9 pages, 5 figure
Living on the edge of chaos: minimally nonlinear models of genetic regulatory dynamics
Linearized catalytic reaction equations modeling e.g. the dynamics of genetic
regulatory networks under the constraint that expression levels, i.e. molecular
concentrations of nucleic material are positive, exhibit nontrivial dynamical
properties, which depend on the average connectivity of the reaction network.
In these systems the inflation of the edge of chaos and multi-stability have
been demonstrated to exist. The positivity constraint introduces a nonlinearity
which makes chaotic dynamics possible. Despite the simplicity of such minimally
nonlinear systems, their basic properties allow to understand fundamental
dynamical properties of complex biological reaction networks. We analyze the
Lyapunov spectrum, determine the probability to find stationary oscillating
solutions, demonstrate the effect of the nonlinearity on the effective in- and
out-degree of the active interaction network and study how the frequency
distributions of oscillatory modes of such system depend on the average
connectivity.Comment: 11 pages, 5 figure
Toward an ecological aesthetics: music as emergence
In this article we intend to suggest some ecological based principles
to support the possibility of develop an ecological aesthetics. We consider that
an ecological aesthetics is founded in concepts as “direct perception”,
“acquisition of affordances and invariants”, “embodied embedded
perception” and so on. Here we will purpose that can be possible explain
especially soundscape music perception in terms of direct perception, working
with perception of first hand (in a Gibsonian sense). We will present notions
as embedded sound, detection of sonic affordances and invariants, and at the
end we purpose an experience with perception/action paradigm to make
soundscape music as emergence of a self-organized system
Closing the Generalization Gap in One-Shot Object Detection
Despite substantial progress in object detection and few-shot learning,
detecting objects based on a single example - one-shot object detection -
remains a challenge: trained models exhibit a substantial generalization gap,
where object categories used during training are detected much more reliably
than novel ones. Here we show that this generalization gap can be nearly closed
by increasing the number of object categories used during training. Our results
show that the models switch from memorizing individual categories to learning
object similarity over the category distribution, enabling strong
generalization at test time. Importantly, in this regime standard methods to
improve object detection models like stronger backbones or longer training
schedules also benefit novel categories, which was not the case for smaller
datasets like COCO. Our results suggest that the key to strong few-shot
detection models may not lie in sophisticated metric learning approaches, but
instead in scaling the number of categories. Future data annotation efforts
should therefore focus on wider datasets and annotate a larger number of
categories rather than gathering more images or instances per category
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