Random and exhaustive generation of permutations and cycles

In 1986 S. Sattolo introduced a simple algorithm for uniform random generation of cyclic permutations on a fixed number of symbols. This algorithm is very similar to the standard method for generating a random permutation, but is less well known. We consider both methods in a unified way, and discuss their relation with exhaustive generation methods. We analyse several random variables associated with the algorithms and find their grand probability generating functions, which gives easy access to moments and limit laws.Comment: 9 page

Mlh2 is an accessory factor for DNA mismatch repair in Saccharomyces cerevisiae.

In Saccharomyces cerevisiae, the essential mismatch repair (MMR) endonuclease Mlh1-Pms1 forms foci promoted by Msh2-Msh6 or Msh2-Msh3 in response to mispaired bases. Here we analyzed the Mlh1-Mlh2 complex, whose role in MMR has been unclear. Mlh1-Mlh2 formed foci that often colocalized with and had a longer lifetime than Mlh1-Pms1 foci. Mlh1-Mlh2 foci were similar to Mlh1-Pms1 foci: they required mispair recognition by Msh2-Msh6, increased in response to increased mispairs or downstream defects in MMR, and formed after induction of DNA damage by phleomycin but not double-stranded breaks by I-SceI. Mlh1-Mlh2 could be recruited to mispair-containing DNA in vitro by either Msh2-Msh6 or Msh2-Msh3. Deletion of MLH2 caused a synergistic increase in mutation rate in combination with deletion of MSH6 or reduced expression of Pms1. Phylogenetic analysis demonstrated that the S. cerevisiae Mlh2 protein and the mammalian PMS1 protein are homologs. These results support a hypothesis that Mlh1-Mlh2 is a non-essential accessory factor that acts to enhance the activity of Mlh1-Pms1

Климатические особенности и статистические оценки изменения элементов климата в районах вечной мерзлоты на территории севера Западной Сибири

Актуальность работы связана с необходимостью оценки изменений климата, влияющих на многолетнюю мерзлоту, в связи с возможным увеличением выбросов парниковых газов и увеличения аварийности на объектах промышленной, в том числе и нефтегазовой, инфраструктуры при таянии многолетнемерзлых пород. Цель работы: исследование современных изменений характеристик климата, непосредственно влияющих на термическое состояние почвогрунтов в районах распространения многолетней мерзлоты севера Западной Сибири. Методы исследования. Анализ многолетних изменений метеорологических данных включал в себя проверку нулевых гипотез о случайности и однородности рядов наблюдений и наличия тренда. Проверка на однородность осуществлялась с помощью теста Аббе, на случайность - критерием Питмена, на наличие тренда производилась с помощью критерия инверсий. Вывод о неслучайном изменении или нарушении однородности рядов соответствовал условию, когда расчетная статистика превышала соответствующее критическое значение при уровне значимости 0,05. Результаты. Рассмотрены особенности климата севера Западной Сибири и его изменчивость в последние годы. Исследованы изменения температуры воздуха и почвогрунтов на глубинах 160 и 320 см, продолжительность прямой солнечной радиации, суммы атмосферных осадков и высоты снежного покрова на основе инструментальных данных за последние 35 лет. В результате статистического анализа установлено сохранение темпов роста температуры воздуха в теплое время года, увеличение температуры почвогрунтов в течение всего года, выявлен зональный характер изменения суммы атмосферных осадков и снежного покрова. Микроклиматические изменения характеристик метеорологических величин могут искажать реальную картину изменения климата.The relevance of the research is related to the necessity to assess climate changes affecting the permafrost due to the possible growth of greenhouse gas emissions and increase of accident rate in industrial, oil and gas infrastructure at permafrost thawing. The aim of the research is to estimate the current changes in climate characteristics, which affect directly the thermal state of soils in permafrost areas in the north of Western Siberia. Methods. Analysis of long-term changes of meteorological data consisted of tests of null hypothesis of randomness and homogeneity of observation series and trend presence. The homogeneity test was carried out using the Abbe test, the test of randomness was carried out by Pitman criterion, the trend presence was checked using the criterion of inversions. The conclusion on nonrandom change or violation of the homogeneity of rows corresponded to the condition, when the modulus of the estimated statistics exceeded the corresponding critical value at significance level of 0,05. Results. The paper considers the climatic features in the north of Western Siberia and its variability in recent years. The analysis of temperature changes of air and soil at depths of 160 and 320 cm, the amount of precipitation and snow cover based on the instrumental data for the last 35 years has shown that air temperature continues rising in the warmer months, soil temperature increases throughout the year. The authors have revealed zonal character of changes in the amount of precipitation and snow cover. Microclimatic changes in characteristic of meteorological values can distort the real picture of climate change

Suspension-adapted Chinese hamster ovary-derived cells expressing green fluorescent protein as a screening tool for biomaterials

Synthetic biomaterials play an important role in regenerative medicine. To be effective they must support cell attachment and proliferation in addition to being non-toxic and non-immunogenic. We used a suspension-adapted Chinese hamster ovary-derived cell line expressing green fluorescent protein (GFP) to assess cell attachment and growth on synthetic biomaterials by direct measurement of GFP-specific fluorescence. To simplify operations, all cell cultivation steps were performed in orbitally-shaken, disposable containers. Comparative studies between this GFP assay and previously established cell quantification assays demonstrated that this novel approach is suitable for rapid screening of a large number of samples. Furthermore the utility of our assay system was confirmed by evaluation of cell growth on three polyvinylidene fluoride polymer scaffolds that differed in pore diameter and drawing conditions. The data presented here prove the general utility of GFP-expressing cell lines and orbital shaking technology for the screening of biomaterials for tissue engineering application

Synthesis of RuO 2 nanowires from Ru thin films by atmospheric pressure micro-post-discharge

International audienceOxidation by a micro-post-discharge at atmospheric pressure of thin films of ruthenium deposited on fused silica by pressure-modulated magnetron sputtering is studied. Single-crystalline RuO 2 nanowires are obtained for the first time with a diffusion process over large areas. Nanowires grow typically at temperatures below 550-600 K, provided the level of stress is high enough to fragment grains in sub-grains with sizes between 30 and 50 nm. Because of the alternation of dense and porous layers forming the coating, inward diffusion of vacancies leads to no patent Kirkendall's effect, pores being distributed over the whole coating thickness and not mainly at the interface with the substrate. The centre of the treatment being heated at temperatures higher than 900 K, gaseous RuO 4 is formed, leading to an evaporated area. At its edge, a ring of microcrystals is formed, likely by a CVD mechanism

How Flies Are Flirting on the Fly

Background  Flies have some of the most elaborate visual systems in the Insecta, often featuring large, sexually dimorphic eyes with specialized “bright zones” that may have a functional role during mate-seeking behavior. The fast visual system of flies is considered to be an adaptation in support of their advanced flight abilities. Here, we show that the immense processing speed of the flies’ photoreceptors plays a crucial role in mate recognition. Results  Video-recording wing movements of abdomen-mounted common green bottle flies, Lucilia sericata, under direct light at 15,000 frames per second revealed that wing movements produce a single, reflected light flash per wing beat. Such light flashes were not evident when we video-recorded wing movements under diffuse light. Males of L. sericata are strongly attracted to wing flash frequencies of 178 Hz, which are characteristic of free-flying young females (prospective mates), significantly more than to 212, 235, or 266 Hz, characteristic of young males, old females, and old males, respectively. In the absence of phenotypic traits of female flies, and when given a choice between light emitting diodes that emitted either constant light or light pulsed at a frequency of 110, 178, 250, or 290 Hz, males show a strong preference for the 178-Hz pulsed light, which most closely approximates the wing beat frequency of prospective mates. Conclusions  We describe a previously unrecognized visual mate recognition system in L. sericata. The system depends upon the sex- and age-specific frequencies of light flashes reflecting off moving wings, and the ability of male flies to distinguish between the frequency of light flashes produced by rival males and prospective mates. Our findings imply that insect photoreceptors with fast processing speed may not only support agile flight with advanced maneuverability but may also play a supreme role in mate recognition. The low mating propensity of L. sericata males on cloudy days, when light flashes from the wings of flying females are absent, seems to indicate that these flies synchronize sexual communication with environmental conditions that optimize the conspicuousness of their communication signals, as predicted by sensory drive theory

Interaction of (3-Aminopropyl)triethoxysilane with Pulsed Ar-O 2 Afterglow: Application to Nanoparticles Synthesis

International audienceThe interaction of (3-Aminopropyl)triethoxysilane (APTES) with pulsed late Ar-O 2 afterglow is characterized by the synthesis of OH, CO and CO 2 in the gas phase as main by-products. Other minor species like CH, CN and C 2 H are also produced. We suggest that OH radicals are produced in a first step by dehydrogenation of APTES after interaction with oxygen atoms. In a second step, the molecule is oxidized by any O 2 state, to form peroxides that transform into by-products, break thus the precursor CC bonds. If oxidation is limited, i.e. a low duty cycle, fragmentation of the precursor is limited and produced nanoparticles keep the backbone structure of the precursor, but contain amide groups produced from the amine groups initially available in APTES. At high duty cycle, silicon-containing fragments contain some carbon and react together and produce nanoparticles with a non-silica-like structure

Multimodal and Multifunctional Signaling? – Web Reduction Courtship Behavior in a North American Population of the False Black Widow Spider

Males of widow spiders courting on the web of females engage in web-reduction behavior which entails excising a section of the web, bundling it up, and wrapping it with their silk. Males of the false black widow spider, Steatoda grossa, in European populations also produce stridulatory courtship sound which has not yet been studied in their invaded North American range. Working with a North American population of S. grossa, we tested the hypotheses that (1) web reduction by males renders webs less attractive to rival males; (2) deposition of silk by courting males has an inter-sexual (male-female) signal function that enhances their likelihood of copulation; and (3) stridulatory sound is a courtship signal of males. Testing anemotactic attraction of males in Y-tube olfactometer experiments revealed that reduced webs (indicative of a mated female) and intact webs (indicative of a virgin female) were equally attractive to males. Recording courtship behavior of males with either functional (silk-releasing) spinnerets or spinnerets experimentally occluded on the web of virgin females showed that males with functional spinnerets were more likely to copulate with the female they courted. Although males possess the stridulatory apparatus to produce courtship sound, they did not stridulate when courting or copulating on the web of females. Our data support the conclusion that web-reduction behavior of S. grossa males in their invaded North American range has no long-range effect on mate seeking males. Instead, web-reduction behavior has an inter-sexual signaling function that seems to be linked to functional spinnerets of the courting male. The signal produced by a male likely entails a volatile silk-borne pheromone, but may also embody a gauge of his endurance (the amount of time he engages in web reduction causing web vibrations)

Heartburn\u27s hidden impact: A narrative review exploring gastroesophageal reflux disease (GERD) as a cardiovascular disease risk factor

Gastroesophageal reflux disease (GERD) is a very common disease with an estimated 442 million cases worldwide. It is a well-documented independent risk factor for many gastrointestinal pathologies, however, its role in cardiovascular disease (CVD) is unclear, despite its high prevalence in patients with CVD. Although traditionally considered a causative agent of noncardiac chest pain, a common imitator of cardiac chest pain, or an incidentally shared comorbidity in patients with CVD, a number of studies have implicated GERD and its therapies as risk factors for CVD. This narrative review will explore the relationship between GERD and CVD, including medical and mechanical therapeutic approaches for GERD that could potentially impact the incidence, progression, and mortality of CVD