Modelling the impacts of European emission and climate change scenarios on acid-sensitive catchments in Finland

The dynamic hydro-chemical Model of Acidification of Groundwater in Catchments (MAGIC) was used to predict the response of 163 Finnish lake catchments to future acidic deposition and climatic change scenarios. Future deposition was assumed to follow current European emission reduction policies and a scenario based on maximum (technologically) feasible reductions (MFR). Future climate (temperature and precipitation) was derived from the HadAM3 and ECHAM4/OPYC3 general circulation models under two global scenarios of the Intergovernmental Panel on Climate Change (IPCC: A2 and B2). The combinations resulting in the widest range of future changes were used for simulations, i.e., the A2 scenario results from ECHAM4/OPYC3 (highest predicted change) and B2 results from HadAM3 (lowest predicted change). Future scenarios for catchment runoff were obtained from the Finnish watershed simulation and forecasting system. The potential influence of future changes in surface water organic carbon concentrations was also explored using simple empirical relationships based on temperature and sulphate deposition. Surprisingly, current emission reduction policies hardly show any future recovery; however, significant chemical recovery of soil and surface water from acidification was predicted under the MFR emission scenario. The direct influence of climate change (temperate and precipitation) on recovery was negligible, as runoff hardly changed; greater precipitation is offset by increased evapotranspiration due to higher temperatures. However, two exploratory empirical DOC models indicated that changes in sulphur deposition or temperature could have a confounding influence on the recovery of surface waters from acidification, and that the corresponding increases in DOC concentrations may offset the recovery in pH due to reductions in acidifying depositions

Modelling acidification, recovery and target loads for headwater catchments in Nova Scotia, Canada

The response of twenty acid-sensitive headwater catchments in Nova Scotia to acidic deposition was investigated for the period 1850–2100 using a dynamic hydrochemical model (MAGIC: Model of Acidification of Groundwater in Catchments). To ensure robust model simulation, MAGIC was calibrated to the long-term chemical trend in annual lake observations (13–20 years). Model simulations indicated that the surface waters of all twenty catchments acidified to the 1970s but showed subsequent recovery (increases in acid neutralising capacity (ANC) and pH) as sulphate deposition decreased. However, under proposed future emissions reductions (approximately 50% of current deposition) simulated ANC and pH will not return to estimated pre-industrial levels by 2100. An ANC of 20 μmol_c L^−1 and pH of 5.4 were defined as acceptable chemical thresholds (or critical chemical limits) for aquatic organisms in the current study. Under the proposed emissions reductions only one catchment is predicted to remain below the critical limit for ANC by 2100; three additional catchments are predicted to remain below the critical limit for pH. Dynamic models may be used to estimate target loads, i.e., the required deposition reductions to achieve recovery within a given time. Setting target loads at approximately 30% of current depositions would allow three of the four lakes to reach the chemical criteria by 2030. In contrast to the generally good prognosis for surface waters, soils lost an average of 32% of estimated initial base saturation and recovery is estimated to be very slow, averaging 23% lower than pre-acidification levels in 2100

The ability to accumulate deoxyuridine triphosphate and cellular response to thymidylate synthase (TS) inhibition

Thymidylate synthase (TS) is an important enzyme catalysing the reductive methylation of dUMP to dTMP that is further metabolized to dTTP for DNA synthesis. Loss of viability following TS inhibition occurs as a consequence of depleted dTTP pools and at least in some cell lines, accumulation of dUTP and subsequent misincorporation of uracil into DNA. The expansion in dUTP pools is largely determined by the expression of the pyrophosphatase, dUTPase. Our previous work has shown that following TS inhibition the ability to accumulate dUTP was associated with an earlier growth inhibitory effect. 3 human lung tumour cell lines and HT29 human colon tumour cells transfected with dUTPase have been used to investigate the relationship between loss of viability following TS inhibition and dUTP accumulation. Cell cycle arrest typical of TS inhibition was an early event in all cell lines and occurred irrespective of the ability to accumulate dUTP or p53 function. However, a large expansion of dUTP pools was associated with mature DNA damage (4 h) and an earlier loss of viability following TS inhibition compared to cells in which dUTP pools were not expanded. In A549 cells damage to mature DNA may have been exacerbated by significantly higher activity of the excision repair enzyme, uracil-DNA glycosylase. Consistent with results using different inhibitors of TS, transfection of dUTPase into HT29 cells significantly reduced the cytotoxicity of a 24 h but not 48 h exposure to ZD9331. Although loss of viability can be mediated through dTTP deprivation alone, the uracil misincorporation pathway resulted in an earlier commitment to cell death. The relevance of this latter pathway in the clinical response to TS inhibitors deserves further investigation. © 2001 Cancer Research Campaign http://www.bjcancer.co

VSCAN: An Enhanced Video Summarization using Density-based Spatial Clustering

In this paper, we present VSCAN, a novel approach for generating static video summaries. This approach is based on a modified DBSCAN clustering algorithm to summarize the video content utilizing both color and texture features of the video frames. The paper also introduces an enhanced evaluation method that depends on color and texture features. Video Summaries generated by VSCAN are compared with summaries generated by other approaches found in the literature and those created by users. Experimental results indicate that the video summaries generated by VSCAN have a higher quality than those generated by other approaches.Comment: arXiv admin note: substantial text overlap with arXiv:1401.3590 by other authors without attributio

Deoxyuridine triphosphatase (dUTPase) expression and sensitivity to the thymidylate synthase (TS) inhibitorD9331

Uracil DNA misincorporation and misrepair of DNA have been recognized as important events accompanying thymidylate synthase (TS) inhibition. dUTPase catalyses the hydrolysis of dUTP to dUMP, thereby maintaining low intracellular dUTP. We have addressed the relationship between dUTPase expression and cellular sensitivity to TS inhibition in four human lung tumour cell lines. Sensitivity (5-day MTT assay) to the growth inhibitory effects of the non-polyglutamatable, specific quinazoline TS inhibitor ZD9331, varied up to 20-fold (IC 50 3–70 nM). TS protein expression correlated with TS activity (r2= 0.88 P= 0.05). Intracellular concentrations of drug following exposure to ZD9331 (1 μM, 24 h) varied by ~2-fold and dTTP pools decreased by > 80% in all cell lines. No clear associations across the cell lines between intracellular drug concentrations, TS activity/expression, or TTP depletion could be made. dUTPase activity varied 17-fold and correlated with dUTPase protein expression (r2= 0.94 P= 0.03). There was a striking variation in the amount of dUTP formed following exposure to ZD9331 (between 1.3 and 57 pmole 10–6cells) and was in general inversely associated with dUTPase activity. A large expansion in the dUTP pool was associated with increased sensitivity to a 24-h exposure to ZD9331 in A549 cells that have low dUTPase activity/expression. dUTPase expression and activity were elevated (approximately 3-fold) in two variants of a human lymphoblastoid cell line with acquired resistance to TS inhibitors, further suggesting an important role for this enzyme in TS inhibited cells. © 2000 Cancer Research Campaig

Assessment of inherent fluctuations of mitotic and labelling indices of human tumours.

A method is presented to evaluate the influence of statistical errors and inherent variation on the determination of mitotic and labelling indices of human tumours. In most of the experiments reported here, sufficient cells were counted to yield a statistical error which is small in comparison to the inherent differences in the proliferative indices, both between different sites in the same tumour and between different tumours of the same histological type. These inherent fluctuations are, theefore, a critical factor in cell kinetic studies of human tumours

Circulating miRNAs miR-34a and miR-150 associated with colorectal cancer progression

BACKGROUND: Screening for the early detection of colorectal cancer is important to improve patient survival. The aim of this study was to investigate the potential of circulating cell-free miRNAs as biomarkers of CRC, and their efficiency at delineating patients with polyps and benign adenomas from normal and cancer patient groups. METHODS: The expression of 667 miRNAs was assessed in a discovery set of 48 plasma samples comprising normal, polyp, adenoma, and early and advanced cancer samples. Three miRNAs (miR-34a, miR-150, and miR-923) were further examined in a validation cohort of 97 subjects divided into the same five groups, and in an independent public dataset of 40 CRC samples and paired normal tissues. RESULTS: High levels of circulating miR-34a and low miR-150 levels distinguished groups of patients with polyps from those with advanced cancer (AUC = 0.904), and low circulating miR-150 levels separated patients with adenomas from those with advanced cancer (AUC = 0.875). In addition, the altered expression of miR-34a and miR-150 in an independent public dataset of forty CRC samples and paired normal tissues was confirmed. CONCLUSION: We identified two circulating miRNAs capable of distinguishing patient groups with different diseases of the colon from each other, and patients with advanced cancer from benign disease groups. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12885-015-1327-5) contains supplementary material, which is available to authorized users

Comparison of three methods of feeding sows in gestation and the subsequent effects on lactation performance

A total of 684 sows from breeding groups over six weeks were used to compare three methods of feeding during gestation and to assess the subsequent effects on lactation performance. Control gilts and sows were fed according to body condition based on a scale of 1 to 5, (1=thin, 5=fat). Sows were visually assessed for body condition at breeding and were assigned a daily feed allowance to achieve a body condition score of 3 at farrowing. Sow body condition was evaluated every two weeks throughout gestation, and feed allowance was adjusted as required. Treatment two used feeding levels based on backfat thickness (measured between d 0 and 5 after breeding) and weight at weaning for sows or weight at service for gilts. Feed allowance was calculated to achieve a target backfat of 19 mm at farrowing. Sow feeding level remained constant from d 0 to 101 of gestation. Feed allowances were based on modeled calculations of energy and nutrient requirements to achieve target sow maternal weight and backfat gain. Treatment three was identical to treatment two except that feeding pattern was altered for thin sows and gilts (\u3c15 mm at service) in an attempt to reach 19 mm by d 36 of gestation. Sows were weighed at the previous weaning and gilts at-service and again between d 112 and 114 of gestation. Backfat was measured between d 0 and 5 and again between d 108 and 113 of gestation. Sows on treatments two and three achieved backfat of 19 and 19.1 mm at farrowing, respectively, while control sows numerically tended to have greater backfat at farrowing (20 mm). On average, sows targeted to gain large amounts (6 to 9 mm) of backfat in gestation failed to achieve target gains regardless of feeding method. Feeding sows in gestation based on backfat (treatments two and three) resulted in a higher proportion of sows in the target backfat range of 17 to 21 mm at farrowing and a lower percentage of fat sows (\u3e21 mm) but no difference in the percentage of thin sows (\u3c17 mm) compared to the standard method of feeding based on body condition. Gestation feeding method had no effect on performance during lactation. Feed intake in lactation was lower for high backfat sows (\u3e21 mm) at farrowing compared to sows with \u3c21 mm. The high proportion of sows in the optimum backfat category demonstrates that feeding based on backfat and body weight has potential for facilitating more precise gestation feeding.; Swine Day, 2003, Kansas State University, Manhattan, KS, 200