Vibration Isolation Design for the Micro-X Rocket Payload

Micro-X is a NASA-funded, sounding rocket-borne X-ray imaging spectrometer that will allow high precision measurements of velocity structure, ionization state and elemental composition of extended astrophysical systems. One of the biggest challenges in payload design is to maintain the temperature of the detectors during launch. There are several vibration damping stages to prevent energy transmission from the rocket skin to the detector stage, which causes heating during launch. Each stage should be more rigid than the outer stages to achieve vibrational isolation. We describe a major design effort to tune the resonance frequencies of these vibration isolation stages to reduce heating problems prior to the projected launch in the summer of 2014.Comment: 6 pages, 7 figures, LTD15 Conference Proceeding

ILRI in Asia: an assessment of priorities for Asian livestock research and development

The purpose of this discussion paper is, firstly, to promote debate amongst potential clients of ILRI's research in South and South-East Asia on what ILRI could do in these regions, in collaboration with the NARS, which will assist the development of the livestock industries and, secondly, to provide advice to the ILRI Board and management on the rational for ILRI involvement in the regions, the nature of that involvement, and the mechanisms and process by which ILRI might maximise the benefits from its investment into research and development, particularly in these regions. The paper looks initially at the economic trends in selected countries in both regions and assesses the likely impact of this on dietary preferences and priorities. Having established the potential demands in the regions for the major livestock products (meat, milk, draft-power, eggs and, to a lesser extent, leather, wool and hair) in the next decade or so, the ways in which deficits in supply can be met from existing systems are assessed. The major constraints to improved production are identified and the role that technologically based research can play in alleviating these constraints is examined. The discussion paper then canvasses options for ILRI's participation, facilitation and leadership in some areas of priority research for the region and some possible mechanisms by which ILRI might achieve such objectives are detailed

Estimating Seasonal Movements of Chinook Salmon in Lake Huron from Efficiency Analysis of Coded Wire Tag Recoveries in Recreational Fisheries

The decline of hatchery‐reared Chinook salmon Oncorhynchus tshawytscha stocks in Lakes Huron and Michigan during the 1980s prompted mass‐tagging programs to investigate reproduction, poststocking survival, and movements. In Lake Huron, millions of smolts implanted with coded wire tags (CWTs) were released in Michigan waters and recovered from charter and noncharter fisheries, surveys, and weirs. Using generalized linear models (GLMs), we investigated Chinook salmon seasonal movements based on the spatial and temporal distributions of recoveries by fishing trips in U.S. recreational fisheries and recovery efficiency. We used models incorporating area, month, year, and recovery source; creel‐clerk and “headhunter” (CWT collection specialist) samples; and charter captain reports. We implemented models for recoveries regardless of release area and from one particular area. All model predictors and interactions between month and area were significant. The variation in recovery levels among recovery sources was larger than temporal or spatial variation. Headhunters were 7 times more efficient than captains in recovering CWTs from charter‐boat catch and 11 times more efficient than clerks in recovering CWTs from non‐charter‐boat catch; this was due to the higher catches experienced in charter than in noncharter trips and to different recovery program goals. The spatial and temporal distribution of GLM‐standardized recovery levels suggested that Chinook salmon released along the western coast of Lake Huron moved near shore during early spring and north during summer, returning mostly to nearby stocking areas in summer and fall. To complement our GLM analysis, we evaluated the distributions of CWT salmon released and recovered in U.S. and Canadian waters by all sources. Data supported previous conclusions on longitudinal movements and indicated that in spring fish moved from eastern locations to near shore in western Lake Huron then back to overwinter locations in autumn. These movement patterns coincided with seasonal prey species concentrations and favorable temperatures. The implications of our results for salmon fisheries management and the design of future tagging studies are discussed.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/142006/1/nafm0792.pd

Seasonal Movements of Chinook Salmon in Lake Michigan Based on Tag Recoveries from Recreational Fisheries and Catch Rates in Gill‐Net Assessments

There are no specific studies of the movements of introduced Chinook salmon Oncorhynchus tshawytscha in Lake Michigan, despite the need for such information for population assessments and stocking allocations. We investigated the seasonal distribution of hatchery‐reared Chinook salmon between May and September based on fishery‐dependent (recoveries from recreational fisheries of fish marked with coded wire tags [CWTs]) and fishery‐independent sources (catches in assessment gill‐net surveys). We modeled recoveries by fishing trips in Michigan waters of Lake Michigan to estimate spatially and temporally explicit abundance indices using generalized linear models (GLMs) and accounted for the efficiency among recovery sources (charter boat captain reports, creel clerk interviews, and headhunter collections of CWT samples from charter boat and non‐charter boat catches). Recovery levels varied among areas, months, years, and recovery sources, and distribution among areas also varied by month. We used CWT data with lakewide geographical coverage and evaluated the distributions of the absolute numbers of coded‐wire‐tagged fish recovered in Michigan and Wisconsin waters of Lake Michigan from all possible recovery sources. From both analyses we found that the distribution of Chinook salmon varied seasonally, with displacements from southern areas toward the north from May through summer, from inshore to offshore areas toward the west during summer, and movement back east in the fall. For the analysis of Chinook salmon catch rates in gill‐net assessments, we used GLMs to compare levels among months, statistical districts, years, nearshore and offshore areas, and different depths. The temporal and spatial trends were similar to those from the CWT analyses, and the distribution shifted toward deeper waters in July and August. Movement patterns coincided with favorable temperature and prey distribution and were consistent with those exhibited by the Pacific Ocean Chinook salmon population from which the Lake Michigan population originated. Seasonal changes in Chinook salmon distribution influence recreational fisheries, and stocking strategies should consider the influences of movement patterns on fishing opportunities in Lake Michigan.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/142273/1/tafs0736.pd

Operative and Radiographic Acetabular Component Orientation in Total Hip Replacement: Influence of Pelvic Orientation and Surgical Positioning Technique

Orthopaedic surgeons often experience a mismatch between perceived intra-operative and radiographic acetabular cup orientation. This research aimed to assess the impact of pelvic orientation and surgical positioning technique on operative and radiographic cup orientation. Radiographic orientations for two surgical approaches were computationally simulated: a mechanical alignment guide and a transverse acetabular ligament approach, both in combination with different pelvic orientations. Positional errors were defined as the difference between the target radiographic orientation and that achieved. The transverse acetabular ligament method demonstrated smaller positional errors for radiographic version; 4.0° ± 2.9° as compared to 9.4° ± 7.3° for the mechanical alignment guide method. However, both methods resulted in similar errors in radiographic inclination. Multiple regression analysis showed that intraoperative pelvic rotation about the anterior-posterior axis was a strong predictor for these errors (B TAL = −0.893, B MAG = −0.951, p &lt; 0.01). Application of the transverse acetabular ligament method can reduce errors in radiographic version. However, if the orthopaedic surgeon is referencing off the theatre floor to control inclination when operating in lateral decubitus, this is only reliable if the pelvic sagittal plane is horizontal. There is currently no readily available method for ensuring that this is the case during total hip replacement surgery. </p

A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics

Quorum sensing is a cell-cell communication process that bacteria use to transition between individual and social lifestyles. In vibrios, homologous small RNAs called the Qrr sRNAs function at the center of quorum-sensing pathways. The Qrr sRNAs regulate multiple mRNA targets including those encoding the quorum-sensing regulatory components luxR, luxO, luxM, and aphA. We show that a representative Qrr, Qrr3, uses four distinct mechanisms to control its particular targets: the Qrr3 sRNA represses luxR through catalytic degradation, represses luxM through coupled degradation, represses luxO through sequestration, and activates aphA by revealing the ribosome binding site while the sRNA itself is degraded. Qrr3 forms different base-pairing interactions with each mRNA target, and the particular pairing strategy determines which regulatory mechanism occurs. Combined mathematical modeling and experiments show that the specific Qrr regulatory mechanism employed governs the potency, dynamics, and competition of target mRNA regulation, which in turn, defines the overall quorum-sensing response

Forecasting the Impacts of Silver and Bighead Carp on the Lake Erie Food Web

Nonindigenous bigheaded carps (Bighead Carp Hypophthalmichthys nobilis and Silver Carp H. molitrix; hereafter, “Asian carps” [AC]) threaten to invade and disrupt food webs and fisheries in the Laurentian Great Lakes through their high consumption of plankton. To quantify the potential effects of AC on the food web in Lake Erie, we developed an Ecopath with Ecosim (EwE) food web model and simulated four AC diet composition scenarios (high, low, and no detritus and low detritus with Walleye Sander vitreus and Yellow Perch Perca flavescens larvae) and two nutrient load scenarios (the 1999 baseline load and 2× the baseline [HP]). We quantified the uncertainty of the potential AC effects by coupling the EwE model with estimates of parameter uncertainty in AC production, consumption, and predator diets obtained using structured expert judgment. Our model projected mean ± SD AC equilibrium biomass ranging from 52 ± 34 to 104 ± 75 kg/ha under the different scenarios. Relative to baseline simulations without AC, AC invasion under all detrital diet scenarios decreased the biomass of most fish and zooplankton groups. The effects of AC in the HP scenario were similar to those in the detrital diet scenarios except that the biomasses of most Walleye and Yellow Perch groups were greater under HP because these fishes were buffered from competition with AC by increased productivity at lower trophic levels. Asian carp predation on Walleye and Yellow Perch larvae caused biomass declines among all Walleye and Yellow Perch groups. Large food web impacts of AC occurred in only 2% of the simulations, where AC biomass exceeded 200 kg/ha, resulting in biomass declines of zooplankton and planktivorous fish near the levels observed in the Illinois River. Our findings suggest that AC would affect Lake Erie's food web by competing with other planktivorous fishes and by providing additional prey for piscivores. Our methods provide a novel approach for including uncertainty into forecasts of invasive species' impacts on aquatic food webs. Received December 6, 2014; accepted July 15, 201

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans

The genomes of numerous parasitic nematodes are currently being sequenced, but their complexity and size, together with high levels of intra-specific sequence variation and a lack of reference genomes, makes their assembly and annotation a challenging task. Haemonchus contortus is an economically significant parasite of livestock that is widely used for basic research as well as for vaccine development and drug discovery. It is one of many medically and economically important parasites within the strongylid nematode group. This group of parasites has the closest phylogenetic relationship with the model organism Caenorhabditis elegans, making comparative analysis a potentially powerful tool for genome annotation and functional studies. To investigate this hypothesis, we sequenced two contiguous fragments from the H. contortus genome and undertook detailed annotation and comparative analysis with C. elegans. The adult H. contortus transcriptome was sequenced using an Illumina platform and RNA-seq was used to annotate a 409 kb overlapping BAC tiling path relating to the X chromosome and a 181 kb BAC insert relating to chromosome I. In total, 40 genes and 12 putative transposable elements were identified. 97.5% of the annotated genes had detectable homologues in C. elegans of which 60% had putative orthologues, significantly higher than previous analyses based on EST analysis. Gene density appears to be less in H. contortus than in C. elegans, with annotated H. contortus genes being an average of two-to-three times larger than their putative C. elegans orthologues due to a greater intron number and size. Synteny appears high but gene order is generally poorly conserved, although areas of conserved microsynteny are apparent. C. elegans operons appear to be partially conserved in H. contortus. Our findings suggest that a combination of RNA-seq and comparative analysis with C. elegans is a powerful approach for the annotation and analysis of strongylid nematode genomes