HD-and-RNA-variants-Chr18.vcf

All HD and RNAseq variants on chromosome 18. Used in the paper for LC and LY GWAS

imputed-seq-genotypes-Chr20.57950000-58950000.vcf

Imputed genotypes for variants within 1Mbp of the Chr20:58.45 LC QTL, for 357 animals

imputed-seq-genotypes-12k-Chr6.88540000-89540000.vcf

Imputed genotypes for variants within 1Mbp of the Chr3:89.04 LC QTL, for 12,000 animals

HD-and-RNA-variants-Chr29.vcf

All HD and RNAseq variants on chromosome 29. Used in the paper for LC and LY GWAS

HD-and-RNA-variants-Chr11.vcf

All HD and RNAseq variants on chromosome 11. Used in the paper for LC and LY GWAS

imputed-seq-genotypes-12k-Chr19.42490000-43490000.vcf

Imputed genotypes for variants within 1Mbp of the Chr19:42.99 LC QTL, for 12,000 animals

imputed-seq-genotypes-12k-Chr3.53340000-54340000.vcf

Imputed genotypes for variants within 1Mbp of the Chr3:53.84 LC QTL, for 12,000 animals

imputed-seq-genotypes-Chr19.33010000-34010000.vcf

Imputed genotypes for variants within 1Mbp of the Chr19:33.51 LC QTL, for 357 animals

LC_GWAS_results.txt

GWAS of lactose concentration in 12k cows, using a generalised least squares model to account for pedigree

imputed-seq-genotypes-Chr6.37260000-38260000.vcf

Imputed genotypes for variants within 1Mbp of the Chr6:37.76 LC QTL, for 357 animals