Biological Records Centre Annual Report 2005-2006

The period covered by this report is the first year of a new six-year partnership between CEH and JNCC. For this period, there is increased emphasis on targeted survey, on analysis and interpretation and on communications and outreach. These activities were always part of BRC’s work, but they have been given greater prominence as a result of rapid developments in information technology. Data are increasingly reaching BRC in electronic form, so that the effort of data entry and collation is reduced. The data, collected by many volunteers and then collated and analysed at BRC, document the changing status and distribution of plants and animals in Britain. Distribution maps are published in atlases and are available via the internet through the NBN Gateway. The effects of change or loss of habitats, the influence of climate change and the consequences of changing water quality are all examples of the environmental factors that affect our biodiversity and which BRC aims to document and understand. The results are vital for developing environmental policies, to support conservation, and for fundamental ecological research. BRC is funded jointly by JNCC and NERC through a partnership based on a Memorandum of Agreement (MoA). The partnership started in 1973 when the Nature Conservancy was divided to form the successor bodies Nature Conservancy Council (NCC) and Institute of Terrestrial Ecology (ITE). NCC was in turn divided further to form JNCC and three Country Agencies, while ITE was merged with other NERC units to form CEH. Through all these changes, the partnership has been maintained. A six-year memorandum of agreement ended on 31 January 2005 (Hill et al. 2005). The present report covers the first full year, 2005-6, of the new agreement for 2005-2010. Rapid progress in information technology continues to be highly beneficial for BRC, whose data are increasingly used by the UK country conservation agencies, environmental consultants, NGOs, research workers, policy makers and volunteers. It is gratifying to know that, through our ability to display data on the National Biodiversity Network (NBN) Gateway, some of our data suppliers now have immediate access to their own data in a convenient form. The year 2005-6 has been one of steady progress, with new datasets added to BRC, substantial additions to existing data, and improved communication with the NBN Gateway. The most high profile activity of the year has been the Harlequin Ladybird Survey, which has enabled us to observe the early stages of colonization by a mobile insect in greater detail than has been possible in any previous case

Molecular and Cellular Mechanisms in Heart Failure

Pathophysiology and treatment of pediatric heart failure (HF) is poorly understood. A growing body of literature demonstrates age-related differences in mechanisms and in therapies efficacy. HF results from ventricular dysfunction due to volume or/and pressure overload. Circulatory, neurohormonal, and molecular alterations promote the progression of HF and ventricular remodeling; they include inflammation, oxidative stress, mitochondrial dysfunction, loss of cardiomyocytes, and fibrosis. Children and young affected by cardiomyopathies have the greatest risk of HF and heart transplantation. Genetic mutations of sarcomere, cytoskeleton, cell membrane proteins, and ion channels have been recognized as the main causes of many cardiomyopathy phenotypes. In particular, sarcomeric and cytoskeleton genes mutations seem to have an important role in the progression of HF. Prognostic stratification and clinical management could benefit from identification of biomarkers such as inflammatory mediators or microRNA (miRNA). miRNA and myocardial regenerative strategies are under investigations as potential novel therapeutic approaches

Effect of various crop and pasture species on the growth of a subsequent wheat crop

83WH29: The effect of various crop and pasture species on the growth of a subsequent wheat crop. Aim: To characterise the effect of various crop and pasture species on the growth and yield components of a subsequent wheat crop with special emphasis on the nitrogen nutrition of that crop. To provide validation data for modelling wheat growth and nitrogen uptake. Measurements: Factors to be monitored through time were; Soil moisture profiles; Mineral nitrogen profiles; Root growth profiles; Top growth and nitrogen uptake; Development score; Incidence of disease and pests. Seasonal notes, trial design, weed diseases and pests. Results: The results are presented in the following tables. As yet they have not been subject to statistical analysis and conclusions drawn from them should be treated with caution. Table 1. Records the rainfall at WHRS in 1984. Table 2. 1983 production and estimates of nitrogen balance. Table 3. Summer dry matter balance. Table 4. Mineral nitrogen levels. Table 5. Anthesis cuts and yield components. Table 6. Dry matter production through time. Table 7. Soil nitrogen profiles. Table 8. Root lengths. Table 9. ZADOK development scores. Table 10. Water use to 2 metres depth. Table 11. Pre anthesis water use by depth. Table 12. Post anthesis water use by depth

Multi-Instrument Observations of an MSTID over Arecibo Observatory

The Penn State All-Sky Imager (PSASI) at Arecibo Observatory provides planar horizontal context to the vertical ionospheric profiles obtained by the Incoherent Seatter Radar (TSR). Electric field measurements from the Communication/Navigation Outage Forecast System (C/NOFS) satellite are mapped down geomagnetic field lines to the height of the airglow layer; allowing multi-instrument studies of field-aligned irregularities with radar, imager, and satellite. A Medium-Scale Traveling Ionospheric Disturbance (MSTID) was observed during such a conjunction near the December solstice of 2009

USCID fifth international conference

Presented at the fifth international conference on irrigation and drainage, Irrigation and drainage for food, energy and the environment on November 3-6, 2009 in Salt Lake City, Utah.Includes bibliographical references.The urban water demand in Southwest Texas has grown rapidly in recent years due to large population increase. Regulated deficit irrigation (RDI) is one important measure for saving water while maintaining crop yield/ net benefit. An RDI field experiment was conducted at the Texas AgriLIFE Research and Extension Center at Uvalde in the summer of 2008 to examine the water saving potential. Seven irrigation schemes and four varieties were assigned to the experimental field to test their effects on lint yield. The results showed that: 1) The threshold of the replacement ratio is between 0.7 and 0.8 in fixed ratio irrigation schemes. Dynamic irrigation schemes showed a higher potential to save irrigation water. 2) The fiber quality was affected more by varieties than by irrigation schemes. A 50X (fixed 50% ratio) scheme has the potential risk to produce relatively lower quality cotton fiber by affecting fiber length and fiber yellowness. Considering its negative effect on lint yield as well, the 50X scheme is definitely not recommended. The two dynamic irrigation schemes, 50D and 70D, showed no negative effect on fiber quality. The 70D scheme has some potential to increase the fiber quality in fiber length, uniformity, fiber strength and reflectance; however, this scheme uses more irrigation water that the 50D scheme. Although further research is needed before making definitive conclusions, both dynamic schemes could be applied to maintain lint yield and fiber quality while saving more water, compared to the fixed ratio irrigation schemes

Double-illumination photoacoustic microscopy of intestinal hemodynamics following massive small bowel resection

Massive small bowel resection (SBR) results in villus angiogenesis and intestinal adaptation. The exact mechanism that causes intestinal villus angiogenesis remains unknown. We hypothesize that hemodynamic changes within the remnant bowel after SBR will trigger intestinal angiogenesis. To validate this, we used photoacoustic microscopy (PAM) to image the microvascular system of the intestine in C57B6 mice and to measure blood flow and oxygen saturation (sO_2) of a supplying artery and vein. Baseline measurements were made 6 cm proximal to the ileal-cecal junction (ICJ) prior to resection. A 50% proximal bowel resection was then performed, and measurements were again recorded at the same location immediately, 1, 3 and 7 days following resection. The results show that arterial and venous sO_2 were similar prior to SBR. Immediately following SBR, the arterial and venous sO_2 decreased by 14.3 ± 2.7% and 32.7 ± 6.6%, respectively, while the arterial and venous flow speed decreased by 62.9 ± 17.3% and 60.0 ± 20.1%, respectively. Such significant decreases in sO_2 and blood flow indicate a hypoxic state after SBR. Within one week after SBR, both sO2 and blood flow speed had gradually recovered. By 7 days after SBR, arterial and venous sO_2 had increased to 101.0 ± 2.9% and 82.7 ± 7.3% of the baseline values, respectively, while arterial and venous flow speed had increased to 106.0 ± 21.4% and 150.0 ± 29.6% of the baseline values, respectively. Such increases in sO_2 and blood flow may result from angiogenesis following SBR

Double-illumination photoacoustic microscopy

Recent developments of optical-resolution photoacoustic microscopy (OR-PAM) have improved its spatial resolution and imaging speed. However, the penetration depth of OR-PAM is still limited to ∼1  mm in tissue, owing to the strong tissue scattering. Here, we have developed double-illumination PAM (DI-PAM), which illuminates the sample from both top and bottom sides simultaneously. Through phantom and in vivo experiments, we have demonstrated for thin targets that DI-PAM has a penetration depth of ∼2  mm in tissue at 532 nm and a focal zone of 260 μm, both significant improvements over traditional reflection or transmission-mode OR-PAM

Boreal forest fire emissions in fresh Canadian smoke plumes: C_1-C_(10) volatile organic compounds (VOCs), CO_2, CO, NO_2, NO, HCN and CH_3CN

Boreal regions comprise about 17% of the global land area, and they both affect and are influenced by climate change. To better understand boreal forest fire emissions and plume evolution, 947 whole air samples were collected aboard the NASA DC-8 research aircraft in summer 2008 as part of the ARCTAS-B field mission, and analyzed for 79 non-methane volatile organic compounds (NMVOCs) using gas chromatography. Together with simultaneous measurements of CO_2, CO, CH_4, CH_2O, NO_2, NO, HCN and CH_3CN, these measurements represent the most comprehensive assessment of trace gas emissions from boreal forest fires to date. Based on 105 air samples collected in fresh Canadian smoke plumes, 57 of the 80 measured NMVOCs (including CH_2O) were emitted from the fires, including 45 species that were quantified from boreal forest fires for the first time. After CO_2, CO and CH_4, the largest emission factors (EFs) for individual species were formaldehyde (2.1 ± 0.2 g kg^(−1)), followed by methanol, NO_2, HCN, ethene, α-pinene, β-pinene, ethane, benzene, propene, acetone and CH_3CN. Globally, we estimate that boreal forest fires release 2.4 ± 0.6 Tg C yr^(−1) in the form of NMVOCs, with approximately 41% of the carbon released as C_1-C_2 NMVOCs and 21% as pinenes. These are the first reported field measurements of monoterpene emissions from boreal forest fires, and we speculate that the pinenes, which are relatively heavy molecules, were detected in the fire plumes as the result of distillation of stored terpenes as the vegetation is heated. Their inclusion in smoke chemistry models is expected to improve model predictions of secondary organic aerosol (SOA) formation. The fire-averaged EF of dichloromethane or CH_2Cl_2, (6.9 ± 8.6) × 10^(−4)gkg^(−1), was not significantly different from zero and supports recent findings that its global biomass burning source appears to have been overestimated. Similarly, we found no evidence for emissions of chloroform (CHCl_3) or methyl chloroform (CH_3CCl_3) from boreal forest fires. The speciated hydrocarbon measurements presented here show the importance of carbon released by short-chain NMVOCs, the strong contribution of pinene emissions from boreal forest fires, and the wide range of compound classes in the most abundantly emitted NMVOCs, all of which can be used to improve biomass burning inventories in local/global models and reduce uncertainties in model estimates of trace gas emissions and their impact on the atmosphere

Immediate alterations in intestinal oxygen saturation and blood flow after massive small bowel resection as measured by photoacoustic microscopy

Purpose: Massive small bowel resection (SBR) results in villus angiogenesis and a critical adaptation response within the remnant bowel. Previous ex vivo studies of intestinal blood flow after SBR are conflicting. We sought to determine the effect of SBR on intestinal hemodynamics using photoacoustic microscopy, a noninvasive, label-free, high-resolution in vivo hybrid imaging modality. Methods: Photoacoustic microscopy was used to image the intestine microvascular system and measure blood flow and oxygen saturation (SO_2) of the terminal mesenteric arteriole and accompanying vein in C57BL6 mice (n = 7) before and immediately after a 50% proximal SBR. A P value of less than .05 was considered significant. Results: Before SBR, arterial and venous SO_2 were similar. Immediately after SBR, the venous SO_2 decreased with an increase in the oxygen extraction fraction. In addition, the arterial and venous blood flow significantly decreased. Conclusion: Massive SBR results in an immediate reduction in intestinal blood flow and increase in tissue oxygen utilization. These physiologic changes are observed throughout the remnant small intestine. The contribution of these early hemodynamic alterations may contribute to the induction of villus angiogenesis and the pathogenesis of normal intestinal adaptation responses