Additional file 2: Table S4. of Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)

Pairwise comparisons of the SSU gene sequences among Cryptosporidium genotypes. Table S5. Pairwise comparisons of the gp60 gene sequences among Cryptosporidium genotypes. Table S6. Pairwise comparisons of the tpi gene sequences among Cryptosporidium genotypes. (XLSX 29 kb

Additional file 3: of New operational taxonomic units of Enterocytozoon in three marsupial species

Table S3. GenBank accession numbers of all small subunit of ribosomal DNA (SSU) sequences used for phylogenetic analysis (Fig. 2), and associated information. Included here are SSU sequences of (i) key taxa of the family Enterocytozoonidae, including representatives of E. bieneusi from the published literature; (ii) four operational taxonomic units (OTUs)/genotypes of Enterocytozoon identified/defined in the present study; and (iii) the outgroup Parahepatospora carcini. (DOCX 42 kb

Additional file 2: of New operational taxonomic units of Enterocytozoon in three marsupial species

Table S2. GenBank accession numbers of all internal transcribed spacer (ITS) of nuclear ribosomal DNA sequences used for phylogenetic analysis (Fig. 1), and associated information. Included here are ITS sequences of (i) E. bieneusi genotypes representing currently recognised Groups (1 to 9) from the published literature; (ii) five operational taxonomic units (OTUs)/genotypes of Enterocytozoon identified/defined in the present study; and (iii) the outgroups CD8 (KJ668735) and PtEbIX (DQ85585). (DOCX 75 kb

Additional file 3: Table S3. of First detection and genetic characterisation of Enterocytozoon bieneusi in wild deer in Melbourne’s water catchments in Australia

Genotypes D, J and Type IV of Enterocytozoon bieneusi recorded in different animal species and water samples in previous studies. These genotypes were also recorded in the present study. (DOCX 359 kb

Additional file 1: Table S1 of Molecular investigation of Cryptosporidium and Giardia in pre- and post-weaned calves in Hubei Province, China

Oligonucleotide primers and PCR protocol used in this study. (XLSX 37 kb

Additional file 1: Table S1. of First detection and genetic characterisation of Enterocytozoon bieneusi in wild deer in Melbourne’s water catchments in Australia

Enterocytozoon bieneusi genotypes recorded from different animal species and water samples from published literature, representing nine distinct groups and two outgroups. The genotypes of E. bieneusi identified in this study are listed at the end of this table. (DOCX 74 kb

Additional file 2: Table S2 of Molecular investigation of Cryptosporidium and Giardia in pre- and post-weaned calves in Hubei Province, China

Summary of information on the reference sequences from the GenBank database used in the present study. (XLSX 55 kb

Additional file 2: Table S2. of First detection and genetic characterisation of Enterocytozoon bieneusi in wild deer in Melbourne’s water catchments in Australia

Genotypes of Enterocytozoon bieneusi recorded previously in five species of deer worldwide and identified in sambar deer in the present study. (DOCX 69 kb

Additional file 1: of New operational taxonomic units of Enterocytozoon in three marsupial species

Table S1. The numbers of DNA samples from faecal deposits from common wombats (Vombatus ursinus), eastern grey kangaroos (Macropus giganteus) and swamp wallabies (Wallabia bicolor) collected from 11 of Melbourne’s water catchment areas from 2009 to 2017 and tested using PCR-based sequencing of the internal transcribed spacer (ITS) of nuclear ribosomal DNA. Within parentheses are the numbers of samples that were test-positive for Enterocytozoon using this technique and the codes representing currently recognised (NCF2) or novel (MWC_m1 to MWC_m4) operational taxonomic units (OTUs)/genotypes (cf. Table 1 and Additional file 2: Table S2). (XLSX 45 kb

Additional file 4: of New operational taxonomic units of Enterocytozoon in three marsupial species

Table S4. Pairwise comparisons of differences/variation among the small subunit of nuclear ribosomal DNA gene sequences (SSU) (~609 bp consensus length) representing (i) four operational taxonomic units (OTUs)/genotypes of Enterocytozoon identified/defined in the present study (bold-type); (ii) eight species of of the family Enterocytozoonidae; (iii) and the outgroup Parahepatospora carcini used for phylogenetic analysis (cf. Fig. 2; Additional file 3: Table S3). (XLSX 54 kb