hemi_soc_ND4_all-hap

Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of mitochondrial gene ND

hemi_arb-soc_cyb_starbeast12_So-14sp

Sequence alingment for the gene cyb used in the *BEAST analysi

hemi_soc_mc1r_all-hap

Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of nuclear protein coding gene mc1

GenBank accession numbers

GenBank accession numbers of Hemidactylus specimens analyzed in the study

hemi_soc_prdx4_all-hap

Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of nuclear intron prdx

hemi_arb-soc_ND4_starbeast12_So-14sp

Sequence alingment for the gene ND4 used in the *BEAST analysi

Supplemental Material, Appendix_S1 - Biogeographical structure and endemism pattern in reptiles of the Western Palearctic

<p>Supplemental Material, Appendix_S1 for Biogeographical structure and endemism pattern in reptiles of the Western Palearctic by Gentile Francesco Ficetola, Mattia Falaschi, Anna Bonardi, Emilio Padoa-Schioppa, Roberto Sindaco in Progress in Physical Geography: Earth and Environment</p

Sampling site and localities.

<p>Map showing the geographic situation of the Socotra Archipelago and the sampling localities for all the 380 barcoded individuals included in this study. Maps were drawn using DIVA-GIS v.7.5 (available at <a href="http://www.diva-gis.org" target="_blank">http://www.diva-gis.org</a>; digital elevation model freely available at <a href="http://earthobservatory.nasa.gov/" target="_blank">http://earthobservatory.nasa.gov/</a>).</p

Taxonomic accuracy.

<p>Taxonomic accuracy.</p

Bayesian COI tree for all the reptiles of the Socotra Archipelago.

<p>Species delimitations using three distance thresholds with higher taxonomic accuracy (3%, 6% and 9%) and GMYC using three different datasets: A—including all 380 barcoded sequences in the same analysis; B—including independent analyses for Serpentes, Scincoidea, Lacertoidea and Gekkota; C—including independent analyses for the following families: Leptotyphlopidae, Scincidae, Lacertidae, Sphaerodactylidae, Phyllodactylidae, Gekkonidae; *indicates clusters that were depicted as in A because taxa are monoespecific or monogeneric. See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0149985#sec002" target="_blank">Material and Methods</a> for further details. Black dots indicate posterior probability values ≥0.95. Bootstrap values ≥70% of the ML analysis are shown next to the nodes.</p