Genotype for adults

This file includes the genotypes of dmrt1 region for all adults from the two populations: Ammarnas and Tvedora

Three alignments (1 mtDNA, 2 nuDNA)

Alignments (Nexus format) for the mitochondrial D-loop and the concatenated nuclear sequences for phylogeny and maternal ancestry clad

Genotypes of linkage map

This file includes genotyping data of linkage map for several families from each population, Ammarnas and Tvedora

Rarv_stacks.tar.gz

This gzipped tarball contains all outputs from stacks v.1.30, as well as a sex_info.txt file with sex information for all individuals

Texts S1 to S5 and Figs. S1 to S8 from Profound genetic divergence and asymmetric parental genome contributions as hallmarks of hybrid speciation in polyploid toads

Insid

Origin and genome evolution of polyploid green toads in Central Asia_data

Matrix of Microsatellites dat

Hyla_genotypes

Genotypes of parents and offspring for crosses used to infer sex linkage. File contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell. species: Species cross: Collective identifier for 2 parents and their offspring indiv: Unique identifier for an individual stage: Adult, juvenile, or tadpole sex: Sex, observed or inferred from microsatellites sexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles [marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype. [marker name].2: Second of two alleles for the marker

Hyla arborea transcriptome

Adult male H. arborea transcriptome, from brain, eye, heart, liver, muscle, and testis. 2.2 Gbp raw reads assembled with Trinity. When multiple splice variants assembled, only longest retained. Scaffolded with SSPACE. Scaffolds corresponding to genes or gene fragments used in this study: CHD1: scaffold12406 ARL8A: scaffold8654 CHERP: scaffold390 CSDE1: scaffold1308 DMRT1: scaffold6154 DOCK8: scaffold31469 FRYL: scaffold80 KIAA0232: scaffold192 LOC100494802: scaffold13879 MAP1B: scaffold574 MTUS1: scaffold1029 NDRG2: scaffold355 RAD23B: scaffold2417 WDR1: scaffold123

Rana_genotypes

Genotypes of parents and offspring for crosses used to infer sex linkage. Each file contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell. species: Species cross: Collective identifier for 2 parents and their offspring indiv: Unique identifier for an individual stage: Adult, juvenile, or tadpole sex: Sex, observed or inferred from microsatellites sexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles [marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype. [marker name].2: Second of two alleles for the marker

Bufo_genotypes

Genotypes of parents and offspring for backcross used to infer sex linkage. Each file contains 6 descriptive columns plus 2 per marker, and one row per individual. Missing data value: empty cell. species: Species cross: Collective identifier for 2 parents and their offspring indiv: Unique identifier for an individual stage: Adult, juvenile, or tadpole sex: Sex, observed or inferred from microsatellites sexed_by: Sex established by phenotype for adults, microsatellites for tadpoles, dissection for juveniles [marker name].1: One of two alleles for a given marker. For microsatellites, number corresponds to fragment length. For PCR-RFLP markers, 0 or 1 for absence/presence of restriction site. For sequence markers, balearicus or siculus haplotype. [marker name].2: Second of two alleles for the marker