35 research outputs found
The role of conventions in the running of farm shops in the UK
UK farm shops have received little attention in the alternative food network (AFN) literature. Farm shop environmental context was interrogated to establish its influence on the consumption experience. A holistic multi-methods approach was adopted drawing on autoethnography, an exploratory survey, G.I.S, an open-ended customer questionnaire, customer e-WOM reviews, online space rhetoric and imagery, and interviews with owners and farmers partners. Braun and Clarke’s formalised approach to thematic analysis was employed. A negotiated ‘transference’ of trust was identified between vendor/producers and consumers, dependent on primary producers adhering to their production ethos when sourcing brought-in products. Negotiated transference of trust was identified as connected to institutional proximity, afforded to farm-sited farm shops, facilitating customers’ acceptance of AFN hybridity. Farm shops met Pine and Gilmore’s (1998) five factors that aid consumption experiences. These enterprises were revealed to be places of nostalgia-evoking experiential consumption (Hamilton & Wagner, 2014) realised through owner intention (e.g., retroscaping) and incidental associations (i.e., multi-sensory on-farm location). Farm shops facilitated customer escapism through a positive themed event, revealing how the materialities of the farm shop and its working farm environ establish experiential consumption; identified as a source of resistance to supermarket co-optation. Farmers’ partners exhibited an entrepreneur identity in the development and running of the enterprise. Reporting positive rewards of status, emotional pride, and economic contribution to the farm business. These benefits appeared compartmentalised to the enterprise with renegotiation of reproductive work allocation unrealised. The multi-disciplinary approach employed a conceptually-driven lens, utilising convention theory and Brown’s (1999) retroscape, to explore the practices and representations of alterity, experiential consumption, and patriarchy in the formation of the farm shop. The findings provide knowledge progression and promise new ways of understanding AFNs.</p
<sup>17</sup>O NMR Investigation of Water Structure and Dynamics
The structure and dynamics of the
bound water in barium chlorate
monohydrate were studied with <sup>17</sup>O nuclear magnetic resonance
(NMR) spectroscopy in samples that are stationary and spinning at
the magic-angle in magnetic fields ranging from 14.1 to 21.1 T. <sup>17</sup>O NMR parameters of the water were determined, and the effects
of torsional oscillations of the water molecule on the <sup>17</sup>O quadrupolar coupling constant (C<sub>Q</sub>) were delineated with
variable temperature MAS NMR. With decreasing temperature and reduction
of the librational motion, we observe an increase in the experimentally
measured <i>C</i><sub>Q</sub> explaining the discrepancy
between experiments and predictions from density functional theory.
In addition, at low temperatures and in the absence of <sup>1</sup>H decoupling, we observe a well-resolved <sup>1</sup>H–<sup>17</sup>O dipole splitting in the spectra, which provides information
on the structure of the H<sub>2</sub>O molecule. The splitting arises
because of the homogeneous nature of the coupling between the two <sup>1</sup>H–<sup>17</sup>O dipoles and the <sup>1</sup>H–<sup>1</sup>H dipole
<sup>1</sup>H Dynamic Nuclear Polarization Based on an Endogenous Radical
We demonstrate a 15-fold enhancement of solid-state NMR signals
via dynamic nuclear polarization (DNP) based on a stable, naturally
occurring radical in a protein: the flavin mononucleotide (FMN) semiquinone
of flavodoxin. The line width of flavodoxin’s EPR signal suggests
that the dominant DNP mechanism is the solid effect, consistent with
the field-dependent DNP enhancement profile. The magnitude of the
enhancement as well as the bulk-polarization build-up time constant
(Ï„<sub>B</sub>) with which it develops are dependent on the
isotopic composition of the protein. Deuteration of the protein to
85% increased the nuclear longitudinal relaxation time <i>T</i><sub>1n</sub> and Ï„<sub>B</sub> by factors of five and seven,
respectively. Slowed dissipation of polarization can explain the 2-fold
higher maximal enhancement than that obtained in proteated protein,
based on the endogenous semiquinone. In contrast, the long Ï„<sub>B</sub> of TOTAPOL-based DNP in nonglassy samples was not accompanied
by a similarly important long <i>T</i><sub>1n</sub>, and
in this case the enhancement was greatly reduced. The low concentrations
of radicals occurring naturally in biological systems limit the magnitude
of DNP enhancement that is attainable by this means. However, our
enhancement factors of up to 15 can nonetheless make an important
difference to the feasibility of applying solid-state NMR to biochemical
systems. We speculate that DNP based on endogenous radicals may facilitate
MAS NMR characterization of biochemical complexes and even organelles,
and could also serve as a source of additional structural and physiological
information
Proton-Assisted Recoupling (PAR) in Peptides and Proteins
Proton-assisted recoupling (PAR)
is examined by exploring optimal
experimental conditions and magnetization transfer rates in a variety
of biologically relevant nuclear spin-systems, including simple amino
acids, model peptides, and two proteins–nanocrystalline protein
G (GB1), and importantly amyloid beta 1–42 (M<sub>0</sub>Aβ<sub>1–42</sub>) fibrils. A selective PAR protocol, SUBPAR (setting
up better proton assisted recoupling), is described to observe magnetization
transfer in one-dimensional spectra, which minimizes experiment time
(in comparison to two-dimensional experiments) and thereby enables
an efficient assessment of optimal PAR conditions for a desired magnetization
transfer. In the case of the peptide spin systems, experimental and
simulated PAR data sets are compared on a semiquantitative level,
thereby elucidating the interactions influencing PAR magnetization
transfer and their manifestations in different spin transfer networks.
Using the optimum Rabi frequencies determined by SUBPAR, PAR magnetization
transfer trajectories (or buildup curves) were recorded and compared
to simulated results for short peptides. PAR buildup curves were also
recorded for M<sub>0</sub>Aβ<sub>1–42</sub> and examined
conjointly with a recent structural model. The majority of salient
cross-peak intensities observed in the M<sub>0</sub>Aβ<sub>1–42</sub> PAR spectra are well-modeled with a simple biexponential equation,
although the fitting parameters do not show any strong correlation
to internuclear distances. Nevertheless, these parameters provide
a wealth of invaluable semiquantitative structural constraints for
the M<sub>0</sub>Aβ<sub>1–42</sub>. The results presented
here offer a complete protocol for recording PAR <sup>13</sup>C–<sup>13</sup>C correlation spectra with high-efficiency and using the
resulting information in protein structural studies
Proton Association Constants of His 37 in the Influenza‑A M2<sub>18–60</sub> Dimer-of-Dimers
The membrane protein M2 from influenza-A
forms a single-pass transmembrane
helix that assembles in lipid membrane as homotetramers whose primary
function is to act as a proton transporter for viral acidification.
A single residue, histidine 37 (His 37), is known to be responsible
for selectivity and plays an integral role in the protein’s
function. We report pH-dependent <sup>15</sup>N MAS NMR spectra of
His 37 within the influenza-A proton conduction domain of M2, M2<sub>18–60</sub>, which has been previously shown to be a fully
functional construct and was recently determined to adopt a dimer-of-dimers
structure in lipids. By extracting the ratio of [His]/[HisH<sup>+</sup>] as a function of pH, we obtained two doubly degenerate proton disassociation
constants, 7.63 ± 0.15 and 4.52 ± 0.15, despite a possible
maximum of four. We also report the <sup>1</sup>H<sub>Nε</sub> chemical shifts at pH 6.5 recorded at 60 kHz MAS in a CP-based <sup>1</sup>H–<sup>15</sup>N spectrum. We were unable to detect
resonances indicative of direct proton sharing among His 37 side chains
when the tetramer is in the +2 state. In the neutral state, His 37
is exclusively in the τ tautomer, indicating that the δ
nitrogen is protonated solely as a function of pH. We also found that
the plot of [HisH<sup>+</sup>]/[His] as a function of pH is qualitatively
similar to previously reported proton conduction rates, indicating
that proton conduction rate is proportional to the level of histidine
protonation within the channel. Two-dimensional <sup>13</sup>C–<sup>13</sup>C and <sup>13</sup>C–<sup>15</sup>N correlations suggest
that at low pH multiple conformations are populated as the spectra
broaden and eventually disappear as the acidity is increased. A second
highly resolved state at low pH was not observed
Dynamic Nuclear Polarization of <sup>17</sup>O: Direct Polarization
Dynamic nuclear polarization of <sup>17</sup>O was studied using
four different polarizing agents: the biradical TOTAPOL and the monoradicals
trityl and SA-BDPA, as well as a mixture of the latter two. Field
profiles, DNP mechanisms, and enhancements were measured to better
understand and optimize directly polarizing this low-gamma quadrupolar
nucleus using both mono- and biradical polarizing agents. Enhancements
were recorded at <88 K and were >100 using the trityl (OX063)
radical
and <10 with the other polarizing agents. The >10 000-fold
savings in acquisition time enabled a series of biologically relevant
small molecules to be studied with small sample sizes and the measurement
of various quadrupolar parameters. The results are discussed with
comparison to room temperature studies and GIPAW quantum chemical
calculations. These experimental results illustrate the strength of
high field DNP and the importance of radical selection for studying
low-gamma nuclei
Dynamic Nuclear Polarization of Oxygen-17
Oxygen-17-detected DNP NMR of a water/glycerol glass
enabled an
80-fold enhancement of signal intensity at 82 K, using the biradical
TOTAPOL. The >6000-fold savings in acquisition time enable <sup>17</sup>O–<sup>1</sup>H distance measurements and heteronuclear
correlation
experiments. These experiments are the initial demonstration of the
feasibility of DNP NMR on quadrupolar <sup>17</sup>O
Magic-Angle-Spinning NMR of the Drug Resistant S31N M2 Proton Transporter from Influenza A
We report chemical shift assignments of the drug-resistant
S31N
mutant of M2<sub>18–60</sub> determined using 3D magic-angle-spinning
(MAS) NMR spectra acquired with a <sup>15</sup>N–<sup>13</sup>C ZF-TEDOR transfer followed by <sup>13</sup>C–<sup>13</sup>C mixing by RFDR. The MAS spectra reveal two sets of resonances,
indicating that the tetramer assembles as a dimer of dimers, similar
to the wild-type channel. Helicies from the two sets of chemical shifts
are shown to be in close proximity at residue H37, and the assignments
reveal a difference in the helix torsion angles, as predicted by TALOS+,
for the key resistance residue N31. In contrast to wild-type M2<sub>18–60</sub>, chemical shift changes are minimal upon addition
of the inhibitor rimantadine, suggesting that the drug does not bind
to S31N M2
Equilibration of Tyrosyl Radicals (Y<sub>356</sub><sup>•</sup>, Y<sub>731</sub><sup>•</sup>, Y<sub>730</sub><sup>•</sup>) in the Radical Propagation Pathway of the Escherichia coli Class Ia Ribonucleotide Reductase
Escherichia coli ribonucleotide reductase is an α2β2 complex that catalyzes the conversion of nucleotides to deoxynucleotides using a diferric tyrosyl radical (Y<sub>122</sub><sup>•</sup>) cofactor in β2 to initiate catalysis in α2. Each turnover requires reversible long-range proton-coupled electron transfer (PCET) over 35 Å between the two subunits by a specific pathway (Y<sub>122</sub><sup>•</sup> ⇆ [W<sub>48</sub>?] ⇆ Y<sub>356</sub> within β to Y<sub>731</sub> ⇆ Y<sub>730</sub> ⇆ C<sub>439</sub> within α). Previously, we reported that a β2 mutant with 3-nitrotyrosyl radical (NO<sub>2</sub>Y<sup>•</sup>; 1.2 radicals/β2) in place of Y<sub>122</sub><sup>•</sup> in the presence of α2, CDP, and ATP catalyzes formation of 0.6 equiv of dCDP and accumulates 0.6 equiv of a new Y<sup>•</sup> proposed to be located on Y<sub>356</sub> in β2. We now report three independent methods that establish that Y<sub>356</sub> is the predominant location (85–90%) of the radical, with the remaining 10–15% delocalized onto Y<sub>731</sub> and Y<sub>730</sub> in α2. Pulsed electron–electron double-resonance spectroscopy on samples prepared by rapid freeze quench (RFQ) methods identified three distances: 30 ± 0.4 Å (88% ± 3%) and 33 ± 0.4 and 38 ± 0.5 Å (12% ± 3%) indicative of NO<sub>2</sub>Y<sub>122</sub><sup>•</sup>–Y<sub>356</sub><sup>•</sup>, NO<sub>2</sub>Y<sub>122</sub><sup>•</sup>–NO<sub>2</sub>Y<sub>122</sub><sup>•</sup>, and NO<sub>2</sub>Y<sub>122</sub><sup>•</sup>–Y<sub>731(730)</sub><sup>•</sup>, respectively. Radical distribution in α2 was supported by RFQ electron paramagnetic resonance (EPR) studies using Y<sub>731</sub>(3,5-F<sub>2</sub>Y) or Y<sub>730</sub>(3,5-F<sub>2</sub>Y)-α2, which revealed F<sub>2</sub>Y<sup>•</sup>, studies using globally incorporated [β-<sup>2</sup>H<sub>2</sub>]Y-α2, and analysis using parameters obtained from 140 GHz EPR spectroscopy. The amount of Y<sup>•</sup> delocalized in α2 from these two studies varied from 6% to 15%. The studies together give the first insight into the relative redox potentials of the three transient Y<sup>•</sup> radicals in the PCET pathway and their conformations