Multilingual term extraction from comparable corpora : informativeness of monolingual term extraction features

Most research on bilingual automatic term extraction (ATE) from comparable corpora focuses on both components of the task separately, i.e. monolingual automatic term extraction and finding equivalent pairs cross-lingually. The latter usually relies on context vectors and is notoriously inaccurate for infrequent terms. The aim of this pilot study is to investigate whether using information gathered for the former might be beneficial for the cross-lingual linking as well, thereby illustrating the potential of a more holistic approach to ATE from comparable corpora with re-use of information across the components. To test this hypothesis, an existing dataset was expanded, which covers three languages and four domains. A supervised binary classifier is shown to achieve robust performance, with stable results across languages and domains

Dutch hypernym detection : does decompounding help?

This research presents experiments carried out to improve the precision and recall of Dutch hypernym detection. To do so, we applied a data-driven semantic relation finder that starts from a list of automatically extracted domain-specific terms from technical corpora, and generates a list of hypernym relations between these terms. As Dutch technical terms often consist of compounds written in one orthographic unit, we investigated the impact of a decompounding module on the performance of the hypernym detection system. In addition, we also improved the precision of the system by designing filters taking into account statistical and linguistic information. The experimental results show that both the precision and recall of the hypernym detection system improved, and that the decompounding module is especially effective for hypernym detection in Dutch

In no uncertain terms : a dataset for monolingual and multilingual automatic term extraction from comparable corpora

Automatic term extraction is a productive field of research within natural language processing, but it still faces significant obstacles regarding datasets and evaluation, which require manual term annotation. This is an arduous task, made even more difficult by the lack of a clear distinction between terms and general language, which results in low inter-annotator agreement. There is a large need for well-documented, manually validated datasets, especially in the rising field of multilingual term extraction from comparable corpora, which presents a unique new set of challenges. In this paper, a new approach is presented for both monolingual and multilingual term annotation in comparable corpora. The detailed guidelines with different term labels, the domain- and language-independent methodology and the large volumes annotated in three different languages and four different domains make this a rich resource. The resulting datasets are not just suited for evaluation purposes but can also serve as a general source of information about terms and even as training data for supervised methods. Moreover, the gold standard for multilingual term extraction from comparable corpora contains information about term variants and translation equivalents, which allows an in-depth, nuanced evaluation

TermEval 2020 : shared task on automatic term extraction using the Annotated Corpora for term Extraction Research (ACTER) dataset

The TermEval 2020 shared task provided a platform for researchers to work on automatic term extraction (ATE) with the same dataset: the Annotated Corpora for Term Extraction Research (ACTER). The dataset covers three languages (English, French, and Dutch) and four domains, of which the domain of heart failure was kept as a held-out test set on which final f1-scores were calculated. The aim was to provide a large, transparent, qualitatively annotated, and diverse dataset to the ATE research community, with the goal of promoting comparative research and thus identifying strengths and weaknesses of various state-of-the-art methodologies. The results show a lot of variation between different systems and illustrate how some methodologies reach higher precision or recall, how different systems extract different types of terms, how some are exceptionally good at finding rare terms, or are less impacted by term length. The current contribution offers an overview of the shared task with a comparative evaluation, which complements the individual papers by all participants

D-TERMINE : data-driven term extraction methodologies investigated

Automatic term extraction is a task in the field of natural language processing that aims to automatically identify terminology in collections of specialised, domain-specific texts. Terminology is defined as domain-specific vocabulary and consists of both single-word terms (e.g., corpus in the field of linguistics, referring to a large collection of texts) and multi-word terms (e.g., automatic term extraction). Terminology is a crucial part of specialised communication since terms can concisely express very specific and essential information. Therefore, quickly and automatically identifying terms is useful in a wide range of contexts. Automatic term extraction can be used by language professionals to find which terms are used in a domain and how, based on a relevant corpus. It is also useful for other tasks in natural language processing, including machine translation. One of the main difficulties with term extraction, both manual and automatic, is the vague boundary between general language and terminology. When different people identify terms in the same text, it will invariably produce different results. Consequently, creating manually annotated datasets for term extraction is a costly, time- and effort- consuming task. This can hinder research on automatic term extraction, which requires gold standard data for evaluation, preferably even in multiple languages and domains, since terms are language- and domain-dependent. Moreover, supervised machine learning methodologies rely on annotated training data to automatically deduce the characteristics of terms, so this knowledge can be used to detect terms in other corpora as well. Consequently, the first part of this PhD project was dedicated to the construction and validation of a new dataset for automatic term extraction, called ACTER – Annotated Corpora for Term Extraction Research. Terms and Named Entities were manually identified with four different labels in twelve specialised corpora. The dataset contains corpora in three languages and four domains, leading to a total of more than 100k annotations, made over almost 600k tokens. It was made publicly available during a shared task we organised, in which five international teams competed to automatically extract terms from the same test data. This illustrated how ACTER can contribute towards advancing the state-of-the-art. It also revealed that there is still a lot of room for improvement, with moderate scores even for the best teams. Therefore, the second part of this dissertation was devoted to researching how supervised machine learning techniques might contribute. The traditional, hybrid approach to automatic term extraction relies on a combination of linguistic and statistical clues to detect terms. An initial list of unique candidate terms is extracted based on linguistic information (e.g., part-of-speech patterns) and this list is filtered based on statistical metrics that use frequencies to measure whether a candidate term might be relevant. The result is a ranked list of candidate terms. HAMLET – Hybrid, Adaptable Machine Learning Approach to Extract Terminology – was developed based on this traditional approach and applies machine learning to efficiently combine more information than could be used with a rule-based approach. This makes HAMLET less susceptible to typical issues like low recall on rare terms. While domain and language have a large impact on results, robust performance was reached even without domain- specific training data, and HAMLET compared favourably to a state-of-the-art rule-based system. Building on these findings, the third and final part of the project was dedicated to investigating methodologies that are even further removed from the traditional approach. Instead of starting from an initial list of unique candidate terms, potential terms were labelled immediately in the running text, in their original context. Two sequential labelling approaches were developed, evaluated and compared: a feature- based conditional random fields classifier, and a recurrent neural network with word embeddings. The latter outperformed the feature-based approach and was compared to HAMLET as well, obtaining comparable and even better results. In conclusion, this research resulted in an extensive, reusable dataset and three distinct new methodologies for automatic term extraction. The elaborate evaluations went beyond reporting scores and revealed the strengths and weaknesses of the different approaches. This identified challenges for future research, since some terms, especially ambiguous ones, remain problematic for all systems. However, overall, results were promising and the approaches were complementary, revealing great potential for new methodologies that combine multiple strategies

Chapter 33 The Genus Mycobacterium

Practical Handbook of Microbiology, 4th edition provides basic, clear and concise knowledge and practical information about working with microorganisms. Useful to anyone interested in microbes, the book is intended to especially benefit four groups: trained microbiologists working within one specific area of microbiology; people with training in other disciplines, and use microorganisms as a tool or "chemical reagent"; business people evaluating investments in microbiology focused companies; and an emerging group, people in occupations and trades that might have limited training in microbiology, but who require specific practical information

Does One Size Fit All? Drug Resistance and Standard Treatments: Results of Six Tuberculosis Programmes in Former Soviet Countries.

SETTING: After the collapse of the Soviet Union, countries in the region faced a dramatic increase in tuberculosis cases and the emergence of drug resistance. OBJECTIVE: To discuss the relevance of the DOTS strategy in settings with a high prevalence of drug resistance. DESIGN: Retrospective analysis of one-year treatment outcomes of short-course chemotherapy (SCC) and results of drug susceptibility testing (DST) surveys of six programmes located in the former Soviet Union: Kemerovo prison, Russia; Abkhasia, Georgia; Nagorno-Karabagh, Azerbaijan; Karakalpakstan, Uzbekistan; Dashoguz Velayat, Turkmenistan; and South Kazakhstan Oblast, Kazakhstan. Results are reported for new and previously treated smear-positive patients. RESULTS: Treatment outcomes of 3090 patients and DST results of 1383 patients were collected. Treatment success rates ranged between 87% and 61%, in Nagorno-Karabagh and Kemerovo, respectively, and failure rates between 7% and 23%. Any drug resistance ranged between 66% and 31% in the same programmes. MDR rates ranged between 28% in Karakalpakstan and Kemerovo prison and 4% in Nagorno-Karabagh. CONCLUSION: These results show the limits of SCC in settings with a high prevalence of drug resistance. They demonstrate that adapting treatment according to resistance patterns, access to reliable culture, DST and good quality second-line drugs are necessary

Challenges to effective control of tuberculosis and drug resistance in African countries

Drug-resistant tuberculosis (TB) appeared soon after the introduction of chemotherapy and is considered a man-made phenomenon. Despite the efficacy of short course chemotherapy, which includes a cocktail of drugs and has been generally recommended since the 1960s, increasing numbers of multi-drug-resistant (MDR) cases were reported worldwide in the early 1990s. In the WHO’s 2004 report on surveillance of drug-resistant TB, MDRTB is   reported from over 100 countries. Although little data is available on drug-resistant TB in Africa, this paper presents an overview of the current situation on the African continent, which is severely affected by the TB epidemic