17 research outputs found

    The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue

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    Massively parallel sequencing technology now provides the opportunity to sample the transcriptome of a given tissue comprehensively. Transcripts at only a few copies per cell are readily detectable, allowing the discovery of low abundance viral and bacterial transcripts in human tissue samples. Here we describe an approach for mining large sequence data sets for the presence of microbial sequences. Further, we demonstrate the sensitivity of this approach by sequencing human RNA-seq libraries spiked with decreasing amounts of an RNA-virus. At a modest depth of sequencing, viral transcripts can be detected at frequencies less than 1 in 1,000,000. With current sequencing platforms approaching outputs of one billion reads per run, this is a highly sensitive method for detecting putative infectious agents associated with human tissues

    The Politics of Sociotechnical Intervention: An Interactionist View

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    In this article, we apply concepts from symbolic interactionism - a well-established tradition of interpretivist sociology - to investigate the social and political processes involved in a sociotechnical intervention. The intervention was designed to elicit operator involvement in an experimental trial of an advanced manufacturing system at an industrial site in Australia. The interactionist concepts of social worlds, boundary objects and trajectories are used to explore the interrelationships among the theoretical, practical and contextual elements of intervention. We believe that these concepts are flexible intellectual resources that can extend and enrich our understanding of the politics involved in the shaping of work and technology. Such an understanding is necessary if the fields of user participation and sociotechnical design are to move beyond the production of normative discourses and methods into effective interventions in the complex social environments in which technical decisions are made

    Circos [16]plot detailing HaRNAV sequence recovery.

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    <p>The red and blue lines represent reads aligning on the minus and plus strand, respectively. The Heterosigma akashiwo RNA virus has an 8,587 bp ss-RNA linear genome with a single CDS, shown in green on the circos plot. The read depth of coverage is shown in the centre of the plot. The genome is depicted by alternating black-white arcs of 500 bp in size.</p
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