3D Modeling of the Magnetization of Superconducting Rectangular-Based Bulks and Tape Stacks

In recent years, numerical models have become popular and powerful tools to investigate the electromagnetic behavior of superconductors. One domain where this advances are most necessary is the 3D modeling of the electromagnetic behavior of superconductors. For this purpose, a benchmark problem consisting of superconducting cube subjected to an AC magnetic field perpendicular to one of its faces has been recently defined and successfully solved. In this work, a situation more relevant for applications is investigated: a superconducting parallelepiped bulk with the magnetic field parallel to two of its faces and making an angle with the other one without and with a further constraint on the possible directions of the current. The latter constraint can be used to model the magnetization of a stack of high-temperature superconductor tapes, which are electrically insulated in one direction. For the present study three different numerical approaches are used: the Minimum Electro-Magnetic Entropy Production (MEMEP) method, the $H$-formulation of Maxwell's equations and the Volume Integral Method (VIM) for 3D eddy currents computation. The results in terms of current density profiles and energy dissipation are compared, and the differences in the two situations of unconstrained and constrained current flow are pointed out. In addition, various technical issues related to the 3D modeling of superconductors are discussed and information about the computational effort required by each model is provided. This works constitutes a concrete result of the collaborative effort taking place within the HTS numerical modeling community and will hopefully serve as a stepping stone for future joint investigations

Shotgun sequencing of honey DNA can describe honey bee derived environmental signatures and the honey bee hologenome complexity

Honey bees are large-scale monitoring tools due to their extensive environmental exploration. In their activities and from the hive ecosystem complex, they get in close contact with many organisms whose traces can be transferred into the honey, which can represent an interesting reservoir of environmental DNA (eDNA) signatures and information useful to analyse the honey bee hologenome complexity. In this study, we tested a deep shotgun sequencing approach of honey DNA coupled with a specifically adapted bioinformatic pipeline. This methodology was applied to a few honey samples pointing out DNA sequences from 191 organisms spanning different kingdoms or phyla (viruses, bacteria, plants, fungi, protozoans, arthropods, mammals). Bacteria included the largest number of species. These multi-kingdom signatures listed common hive and honey bee gut microorganisms, honey bee pathogens, parasites and pests, which resembled a complex interplay that might provide a general picture of the honey bee pathosphere. Based on the Apis mellifera filamentous virus genome diversity (the most abundant detected DNA source) we obtained information that could define the origin of the honey at the apiary level. Mining Apis mellifera sequences made it possible to identify the honey bee subspecies both at the mitochondrial and nuclear genome levels

The Measurement and Modeling of the Levitation Force between Single-Grain YBCO Bulk Superconductors and Permanent Magnets

The levitation force between a single grain YBCO cylindrical bulk superconductor and a permanent magnet is investigated. The force measured both in zero field cooling and field cooling condition in the temperature range 20 K - 80 K is reported. The dependence of peak levitation force and power dissipation on the temperature is analyzed and the saturation of the peak force with increasing the critical current of the material is pointed out. A numerical analysis is also carried out for understanding the electrodynamics of the levitation mechanism. Good reproduction of the measured data is obtained and relevant observed phenomena, such as hysteresis of the levitation cycle at high temperature and saturation of the peak force at low temperature, are explained by means of the model. Characterization of the material in terms of critical current density in the field range 0 T - 0.5 T is also obtained by means of the numerical model by means of the fitting of the measured data

Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria)

The domestic canary (Serinus canaria) is one of the most common pet birds and has been extensively selected and bred over the last few centuries to constitute many different varieties. Plumage pigmentation is one of the main phenotypic traits that distinguish canary breeds and lines. Feather colours in these birds, similarly to other avian species, are mainly depended on the presence of two major types of pigments: carotenoids and melanins. In this study, we exploited whole genome sequencing (WGS) datasets produced from five canary lines or populations (Black Frosted Yellow, Opal, Onyx, Opal × Onyx and Mogno, some of which carrying different putative dilute alleles), complemented with other WGS datasets retrieved from previous studies, to identify candidate genes that might explain pigmentation variability across canary breeds and varieties. Sequencing data were obtained using a DNA pool-seq approach and genomic data were compared using window-based FST analyses. We identified signatures of selection in genomic regions harbouring genes involved in carotenoid-derived pigmentation variants (CYP2J19, EDC, BCO2 and SCARB1), confirming the results reported by previous works, and identified several other signatures of selection in the correspondence of melanogenesis-related genes (AGRP, ASIP, DCT, EDNRB, KITLG, MITF, MLPH, SLC45A2, TYRP1 and ZEB2). Two putative causative mutations were identified in the MLPH gene that may explain the Opal and Onyx dilute mutant alleles. Other signatures of selection were also identified that might explain additional phenotypic differences between the investigated canary populations

Electro-Thermal Behavior of Layer-Wound BSCCO Coils With and Without Insulation

In this work, the electro-thermal behavior of two layer-wound High Temperature Superconducting (HTS) coils, realized with and without electrical insulation, is compared. Both coils are wound from the same BSCCO tape, and have a very similar geometry, with the same number of turns and layers. A heat input is applied to both coils, by tuning the current supplied to resistive heaters realized through stainless steel tapes wound on the mandrel at the inner surface of both coils. The heaters are in contact with one full inner turn of the winding. The coils are cooled in a liquid nitrogen bath, and the heaters are supplied with a constant current. Then, the windings are charged until the tape critical current is exceeded, and the tests are repeated for different heat loads. The signals acquired through voltage taps, suitably soldered at the same locations in both windings, are compared at the same testing conditions. Finally, the electrical characteristic of the different layers of the coils is related to the temperature of the heater and of the various turns of the coil by means of a 1-D thermal model

Application of next generation semiconductor-based sequencing for the identification of apis mellifera complementary sex determiner (Csd) alleles from honey dna

The complementary sex determiner (csd) gene plays an essential role in the sex determination of Apis mellifera L. Females develop only if fertilized eggs have functional heterozygous genotypes at this gene whereas males, being haploids, are hemizygous. Two identical csd alleles produce non vital males. In light of the recent decline in honey bee populations, it is therefore important to monitor the allele variability at this gene. In this study, we tested the application of next generation semiconductor-based sequencing technology (Ion Torrent) coupled with environmental honey DNA as a source of honey bee genome information to retrieve massive sequencing data for the analysis of variability at the hypervariable region (HVR) of the csd gene. DNA was extracted from 12 honey samples collected from honeycombs directly retrieved from 12 different colonies. A specifically designed bioinformatic pipeline, applied to analyze a total of about 1.5 million reads, identified a total of 160 different csd alleles, 55% of which were novel. The average number of alleles per sample was compatible with the number of expected patrilines per colony, according to the mating behavior of the queens. Allele diversity at the csd could also provide information useful to reconstruct the history of the honey

Thermal and rheological behavior of native and modified starch Araucaria angustifolia (pinhão).

Araucaria angustifolia is known in Brazil as Paraná Pine is endangered due to reckless extraction. The preservation and maintenance of the culture could be stimulated by use derivative products like the starch from its seeds (pinhão). In this work were studied samples of unmodified and modified pinhão starch. The hydrogen peroxide (H2O2) were used in the concentrations 0.1, 0.2 and 0.3 mol.L-1 (a, b, c) and simultaneously exposed in ultraviolet rays (λ = 256 nm) for one hour. One sample (N) was maintained as received for comparisons of the analysis results. The samples were analyzed by the thermoanalytical techniques: thermogravimetry and differential thermal analysis (TG-DTA) and differential scanning calorimetry (DSC); and by the rheological analysis: Rapid Viscoamylographic Analysis (RVA). The TGA showed an increase on the stability values form the (N) sample to the modified ones. The DSC showed a strong decrease on the gelatinization enthalpy with increasing of the H2O2 concentrations solutions valued for the modified samples. The RVA results presented that the Setback reduced with the treatment that used hydrogen peroxide in a higher concentration. The obtained results showed that the modification method applied altered the thermal behavior of the pinhão starch.CBRATEC

Nuclear mitochondrial DNA sequences in the rabbit genome

Numtogenesis is observable in the mammalian genomes resulting in the integration of mitochondrial segments into the nuclear genomes (numts). To identify numts in rabbit, we aligned mitochondrial and nuclear genomes. Alignment significance threshold was calculated and individual characteristics of numts were analysed. We found 153 numts in the nuclear genome. The GC content of numts were significantly lower than the GC content of their genomic flanking regions or the genome itself. The frequency of three mammalian-wide interspersed repeats were increased in the proximity of numts. The decreased GC content around numts strengthen the theory which supposes a link between DNA structural instability and numt integration

Taking advantage from phenotype variability in a local animal genetic resource: identification of genomic regions associated with the hairless phenotype in Casertana pigs

Casertana is an endangered autochthonous pig breed (raised in south-central Italy) that is considered to be the descendant of the influential Neapolitan pig population that was used to improve British breeds in the 19th century. Casertana pigs are characterized by a typical, almost complete, hairless phenotype, even though a few Casertana pigs are normal haired. In this work, using Illumina PorcineSNP60 BeadChip data, we carried out a genome-wide association study and an FST analysis with this breed by comparing animals showing the classical hairless phenotype (n = 81) versus pigs classified as haired (n = 15). Combining the results obtained with the two approaches, we identified two significant regions: one on porcine chromosome (SSC) 7 and one on SSC15. The SSC7 region contains the forkhead box N3 (FOXN3) gene, the most plausible candidate gene of this region, considering that mutations in another gene of the same family (forkhead box N1; Foxn1 or FOXN1) are responsible for the nude locus in rodents and alopecia in humans. Another potential candidate gene, rho guanine nucleotide exchange factor 10 (ARHGEF10), is located in the SSC15 region. FOXN3 and ARHGEF10 have been detected as differentially expressed in androgenetic and senescent alopecia respectively. This study on an autochthonous pig breed contributes to shed some light on novel genes potentially involved in hair development and growth and demonstrates that local animal breeds can be valuable genetic resources for disclosing genetic factors affecting unique traits, taking advantage of phenotype variability segregating in small populations