Spectral information system for Australian spectroscopy data

Abstract presented at 2013 Fall Meeting, AGU, San Francisco, California, USA, 9-13 Dec

Multi-Scale Phenology of Temperate Grasslands: Improving Monitoring and Management With Near-Surface Phenocams

Grasslands of the Australian Southern Tablelands represent a patchwork of native and exotic systems, occupying a continuum of C3-dominated to C4-dominated grasslands where composition depends on disturbance factors (e.g., grazing) and climate. Managing these complex landscapes is both challenging and critical for maintaining the security of Australia's pasture industries, and for protecting the biodiversity of native remnants. Differentiating C3 from C4 vegetation has been a prominent theme in remote sensing research due to distinct C3/C4 seasonal productivity patterns (phenology) and high uncertainty about how C3/C4 vegetation will respond to a changing climate. Phenology is used in northern hemisphere ecosystems for a range of purposes but has not been widely adopted in Australia, where dynamic climate often results in non-repetitive seasonal vegetation patterns. We employed time-lapse cameras (phenocams) to study the phenology of twelve grassland areas dominated by cool season (C3) and warm season (C4), native or exotic grasses near Canberra, Australia. Our aims were to assess phenological characteristics of the functional types and to determine the drivers of phenological variability. We compared the fine-scale phenocam seasonal profiles with field sampling and MODIS/Landsat satellite products to assess paddock-to-landscape functioning. We found C3/C4 species dominance to be the primary driver of phenological differences among grassland types, with C3 grasslands demonstrating peak greenness in spring, and senescing rapidly in response to high summer temperatures. In contrast, C4 grasslands showed peak activity in Austral summer and autumn (January-March). Some sites displayed primary and secondary peaks dependent on rainfall and species composition. We found that the proportion of dead vegetation is an important biophysical driver of grassland phenology, as were grazing pressures and species-dependent responses to rainfall and temperature. The satellite and field datasets were in general agreement with the phenocam results. However, the higher temporal fidelity of the cameras captured changes in vegetation not observed in the coarser satellite or field results. Our phenocam data shows consistent periods of increasing and decreasing greenness over as little as 5 days. Applications for management of grasslands in temperate Australia include the identification of remnant native grasslands, tracking biosecurity issues, and assessing productivity responses to climate variability

Behavior of multitemporal and multisensor passive microwave indices in Southern Hemisphere ecosystems

©2014. American Geophysical Union. All Rights Reserved. This study focused on the time series analysis of passive microwave and optical satellite data collected from six Southern Hemisphere ecosystems in Australia and Argentina. The selected ecosystems represent a wide range of land cover types, including deciduous open forest, temperate forest, tropical and semiarid savannas, and grasslands. We used two microwave indices, the frequency index (FI) and polarization index (PI), to assess the relative contributions of soil and vegetation properties (moisture and structure) to the observations. Optical-based satellite vegetation products from the Moderate Resolution Imaging Spectroradiometer were also included to aid in the analysis. We studied the X and Ka bands of the Advanced Microwave Scanning Radiometer-EOS and Wind Satellite, resulting in up to four observations per day (1:30, 6:00, 13:30, and 18:00-h). Both the seasonal and hourly variations of each of the indices were examined. Environmental drivers (precipitation and temperature) and eddy covariance measurements (gross ecosystem productivity and latent energy) were also analyzed. It was found that in moderately dense forests, FI was dependent on canopy properties (leaf area index and vegetation moisture). In tropical woody savannas, a significant regression (R2) was found between FI and PI with precipitation (R2->-0.5) and soil moisture (R2->-0.6). In the areas of semiarid savanna and grassland ecosystems, FI variations found to be significantly related to soil moisture (R2->-0.7) and evapotranspiration (R2->-0.5), while PI varied with vegetation phenology. Significant differences (p-<-0.01) were found among FI values calculated at the four local times. Key Points Passive microwave indices can be used to estimate vegetation moisture Microwave observations were supported by flux data Passive microwave indices could be used to estimate evapotranspiratio

Parameterization of an ecosystem light-use-efficiency model for predicting savanna GPP using MODIS EVI

© 2014 Elsevier Inc. Accurate estimation of carbon fluxes across space and time is of great importance for quantifying global carbon balances. Current production efficiency models for calculation of gross primary production (GPP) depend on estimates of light-use-efficiency (LUE) obtained from look-up tables based on biome type and coarse-resolution meteorological inputs that can introduce uncertainties. Plant function is especially difficult to parameterize in the savanna biome due to the presence of varying mixtures of multiple plant functional types (PFTs)with distinct phenologies and responses to environmental factors. The objective of this study was to find a simple and robust method to accurately up-scale savanna GPP fromlocal, eddy covariance (EC) flux tower GPP measures to regional scales utilizing entirely remote sensing oservations. Here we assessed seasonal patterns of Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation productswith seasonal EC tower GPP (GPPEC) at four sites along an ecological rainfall gradient (the North Australian Tropical Transect, NATT) encompassing tropical wet to dry savannas. The enhanced vegetation index (EVI) tracked the seasonal variations of GPPEC well at both site- and cross-site levels (R2= 0.84). The EVI relationship with GPPEC was further strengthened through coupling with ecosystem light-use-efficiency (eLUE), defined as the ratio of GPP to photosynthetically active radiation (PAR). Two savanna landscape eLUEmodels, driven by top-of-canopy incident PAR (PARTOC) or top-of-atmosphere incident PAR (PARTOA) were parameterized and investigated. GPP predicted using the eLUE models correlated well with GPPEC, with R2 of 0.85 (RMSE = 0.76 g C m-2 d-1) and 0.88 (RMSE = 0.70 g C m-2 d-1) for PARTOC and PARTOA, respectively, and were significantly improved compared to the MOD17 GPP product (R2 = 0.58, RMSE= 1.43 g C m-2 d-1). The eLUE model also minimized the seasonal hysteresis observed between greenup and brown-down in GPPEC and MODIS satellite product relationships, resulting in a consistent estimation of GPP across phenophases. The eLUE model effectively integrated the effects of variations in canopy photosynthetic capacity and environmental stress on photosynthesis, thus simplifying the up-scaling of carbon fluxes from tower to regional scale. The results fromthis study demonstrated that region-wide savanna GPP can be accurately estimated entirely with remote sensing observations without dependency on coarse-resolution ground meteorology or estimation of light-use-efficiency parameters

Do plant species influence soil CO2 and N2O fluxes in a diverse tropical forest?

To test whether plant species influence greenhouse gas production in diverse ecosystems, we measured wet season soil CO2 and N2O fluxes close to ~300 large (>35 cm in diameter at breast height (DBH)) trees of 15 species at three clay-rich forest sites in central Amazonia. We found that soil CO2 fluxes were 38% higher near large trees than at control sites >10 m away from any tree (P < 0.0001). After adjusting for large tree presence, a multiple linear regression of soil temperature, bulk density, and liana DBH explained 19% of remaining CO2 flux variability. Soil N2O fluxes adjacent to Caryocar villosum, Lecythis lurida, Schefflera morototoni, and Manilkara huberi were 84%-196% greater than Erisma uncinatum and Vochysia maxima, both Vochysiaceae. Tree species identity was the most important explanatory factor for N2O fluxes, accounting for more than twice the N2O flux variability as all other factors combined. Two observations suggest a mechanism for this finding: (1) sugar addition increased N2O fluxes near C. villosum twice as much (P < 0.05) as near Vochysiaceae and (2) species mean N2O fluxes were strongly negatively correlated with tree growth rate (P = 0.002). These observations imply that through enhanced belowground carbon allocation liana and tree species can stimulate soil CO2 and N2O fluxes (by enhancing denitrification when carbon limits microbial metabolism). Alternatively, low N2O fluxes potentially result from strong competition of tree species with microbes for nutrients. Species-specific patterns in CO2 and N2O fluxes demonstrate that plant species can influence soil biogeochemical processes in a diverse tropical forest

MODIS vegetation products as proxies of photosynthetic potential along a gradient of meteorologically and biologically driven ecosystem productivity

© 2016 Author(s). A direct relationship between gross ecosystem productivity (GEP) estimated by the eddy covariance (EC) method and Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indices (VIs) has been observed in many temperate and tropical ecosystems. However, in Australian evergreen forests, and particularly sclerophyll and temperate woodlands, MODIS VIs do not capture seasonality of GEP. In this study, we re-evaluate the connection between satellite and flux tower data at four contrasting Australian ecosystems, through comparisons of GEP and four measures of photosynthetic potential, derived via parameterization of the light response curve: ecosystem light use efficiency (LUE), photosynthetic capacity (Pc), GEP at saturation (GEPsat), and quantum yield (α) with MODIS vegetation satellite products, including VIs, gross primary productivity (GPPMOD) leaf area index (LAIMOD), and fraction of photosynthetic active radiation (fPARMOD). We found that satellite-derived biophysical products constitute a measurement of ecosystem structure (e.g. leaf area index-quantity of leaves) and function (e.g. leaf level photosynthetic assimilation capacity-quality of leaves), rather than GEP. Our results show that in primarily meteorological-driven (e.g. photosynthetic active radiation, air temperature, and/or precipitation) and relatively aseasonal ecosystems (e.g. evergreen wet sclerophyll forests), there were no statistically significant relationships between GEP and satellite-derived measures of greenness. In contrast, for phenology-driven ecosystems (e.g. tropical savannas), changes in the vegetation status drove GEP, and tower-based measurements of photosynthetic activity were best represented by VIs. We observed the highest correlations between MODIS products and GEP in locations where key meteorological variables and vegetation phenology were synchronous (e.g. semi-arid Acacia woodlands) and low correlation at locations where they were asynchronous (e.g. Mediterranean ecosystems). However, we found a statistical significant relationship between the seasonal measures of photosynthetic potential (Pc and LUE) and VIs, where each ecosystem aligns along a continuum; we emphasize here that knowledge of the conditions in which flux tower measurements and VIs or other remote sensing products converge greatly advances our understanding of the mechanisms driving the carbon cycle (phenology and climate drivers) and provides an ecological basis for interpretation of satellite-derived measures of greenness

Land surface phenological response to decadal climate variability across Australia using satellite remote sensing

© 2014 Author(s). Land surface phenological cycles of vegetation greening and browning are influenced by variability in climatic forcing. Quantitative spatial information on phenological cycles and their variability is important for agricultural applications, wildfire fuel accumulation, land management, land surface modeling, and climate change studies. Most phenology studies have focused on temperature-driven Northern Hemisphere systems, where phenology shows annually recurring patterns. However, precipitation-driven non-annual phenology of arid and semi-arid systems (i.e., drylands) received much less attention, despite the fact that they cover more than 30% of the global land surface. Here, we focused on Australia, a continent with one of the most variable rainfall climates in the world and vast areas of dryland systems, where a detailed phenological investigation and a characterization of the relationship between phenology and climate variability are missing. To fill this knowledge gap, we developed an algorithm to characterize phenological cycles, and analyzed geographic and climate-driven variability in phenology from 2000 to 2013, which included extreme drought and wet years. We linked derived phenological metrics to rainfall and the Southern Oscillation Index (SOI). We conducted a continent-wide investigation and a more detailed investigation over the Murray-Darling Basin (MDB), the primary agricultural area and largest river catchment of Australia. Results showed high inter-and intra-annual variability in phenological cycles across Australia. The peak of phenological cycles occurred not only during the austral summer, but also at any time of the year, and their timing varied by more than a month in the interior of the continent. The magnitude of the phenological cycle peak and the integrated greenness were most significantly correlated with monthly SOI within the preceding 12 months. Correlation patterns occurred primarily over northeastern Australia and within the MDB, predominantly over natural land cover and particularly in floodplain and wetland areas. Integrated greenness of the phenological cycles (surrogate of vegetation productivity) showed positive anomalies of more than 2 standard deviations over most of eastern Australia in 2009-2010, which coincided with the transition from the El Niño-induced decadal droughts to flooding caused by La Niña

Soil moisture controls on phenology and productivity in a semi-arid critical zone

© 2016 Elsevier B.V. The Earth's Critical Zone, where physical, chemical and biological systems interact, extends from the top of the canopy to the underlying bedrock. In this study, we investigated soil moisture controls on phenology and productivity of an Acacia woodland in semi-arid central Australia. Situated on an extensive sand plain with negligible runoff and drainage, the carry-over of soil moisture content (θ) in the rhizosphere enabled the delay of phenology and productivity across seasons, until conditions were favourable for transpiration of that water to prevent overheating in the canopy. Storage of soil moisture near the surface (in the top few metres) was promoted by a siliceous hardpan. Pulsed recharge of θ above the hardpan was rapid and depended upon precipitation amount: 150 mm storm− 1 resulted in saturation of θ above the hardpan (i.e., formation of a temporary, discontinuous perched aquifer above the hardpan in unconsolidated soil) and immediate carbon uptake by the vegetation. During dry and inter-storm periods, we inferred the presence of hydraulic lift from soil storage above the hardpan to the surface due to (i) regular daily drawdown of θ in the reservoir that accumulates above the hardpan in the absence of drainage and evapotranspiration; (ii) the dimorphic root distribution wherein most roots were found in dry soil near the surface, but with significant root just above the hardpan; and (iii) synchronisation of phenology amongst trees and grasses in the dry season. We propose that hydraulic redistribution provides a small amount of moisture that maintains functioning of the shallow roots during long periods when the surface soil layer was dry, thereby enabling Mulga to maintain physiological activity without diminishing phenological and physiological responses to precipitation when conditions were favourable to promote canopy cooling

Partitioning controls on Amazon forest photosynthesis between environmental and biotic factors at hourly to interannual timescales

Gross ecosystem productivity (GEP) in tropical forests varies both with the environment and with biotic changes in photosynthetic infrastructure, but our understanding of the relative effects of these factors across timescales is limited. Here, we used a statistical model to partition the variability of seven years of eddy covariance-derived GEP in a central Amazon evergreen forest into two main causes: variation in environmental drivers (solar radiation, diffuse light fraction, and vapor pressure deficit) that interact with model parameters that govern photosynthesis and biotic variation in canopy photosynthetic light-use efficiency associated with changes in the parameters themselves. Our fitted model was able to explain most of the variability in GEP at hourly (R2 = 0.77) to interannual (R2 = 0.80) timescales. At hourly timescales, we found that 75% of observed GEP variability could be attributed to environmental variability. When aggregating GEP to the longer timescales (daily, monthly, and yearly), however, environmental variation explained progressively less GEP variability: At monthly timescales, it explained only 3%, much less than biotic variation in canopy photosynthetic light-use efficiency, which accounted for 63%. These results challenge modeling approaches that assume GEP is primarily controlled by the environment at both short and long timescales. Our approach distinguishing biotic from environmental variability can help to resolve debates about environmental limitations to tropical forest photosynthesis. For example, we found that biotically regulated canopy photosynthetic light-use efficiency (associated with leaf phenology) increased with sunlight during dry seasons (consistent with light but not water limitation of canopy development) but that realized GEP was nonetheless lower relative to its potential efficiency during dry than wet seasons (consistent with water limitation of photosynthesis in given assemblages of leaves). This work highlights the importance of accounting for differential regulation of GEP at different timescales and of identifying the underlying feedbacks and adaptive mechanisms

Understanding water and energy fluxes in the Amazonia: Lessons from an observation-model intercomparison

Tropical forests are an important part of global water and energy cycles, but the mechanisms that drive seasonality of their land-atmosphere exchanges have proven challenging to capture in models. Here, we (1) report the seasonality of fluxes of latent heat (LE), sensible heat (H), and outgoing short and longwave radiation at four diverse tropical forest sites across Amazonia—along the equator from the Caxiuanã and Tapajós National Forests in the eastern Amazon to a forest near Manaus, and from the equatorial zone to the southern forest in Reserva Jaru; (2) investigate how vegetation and climate influence these fluxes; and (3) evaluate land surface model performance by comparing simulations to observations. We found that previously identified failure of models to capture observed dry-season increases in evapotranspiration (ET) was associated with model overestimations of (1) magnitude and seasonality of Bowen ratios (relative to aseasonal observations in which sensible was only 20%–30% of the latent heat flux) indicating model exaggerated water limitation, (2) canopy emissivity and reflectance (albedo was only 10%–15% of incoming solar radiation, compared to 0.15%–0.22% simulated), and (3) vegetation temperatures (due to underestimation of dry-season ET and associated cooling). These partially compensating model-observation discrepancies (e.g., higher temperatures expected from excess Bowen ratios were partially ameliorated by brighter leaves and more interception/evaporation) significantly biased seasonal model estimates of net radiation (Rn), the key driver of water and energy fluxes (LE ~ 0.6 Rn and H ~ 0.15 Rn), though these biases varied among sites and models. A better representation of energy-related parameters associated with dynamic phenology (e.g., leaf optical properties, canopy interception, and skin temperature) could improve simulations and benchmarking of current vegetation–atmosphere exchange and reduce uncertainty of regional and global biogeochemical models