2,819 research outputs found
Parallel Batch-Dynamic Graph Connectivity
In this paper, we study batch parallel algorithms for the dynamic
connectivity problem, a fundamental problem that has received considerable
attention in the sequential setting. The most well known sequential algorithm
for dynamic connectivity is the elegant level-set algorithm of Holm, de
Lichtenberg and Thorup (HDT), which achieves amortized time per
edge insertion or deletion, and time per query. We
design a parallel batch-dynamic connectivity algorithm that is work-efficient
with respect to the HDT algorithm for small batch sizes, and is asymptotically
faster when the average batch size is sufficiently large. Given a sequence of
batched updates, where is the average batch size of all deletions, our
algorithm achieves expected amortized work per
edge insertion and deletion and depth w.h.p. Our algorithm
answers a batch of connectivity queries in expected
work and depth w.h.p. To the best of our knowledge, our algorithm
is the first parallel batch-dynamic algorithm for connectivity.Comment: This is the full version of the paper appearing in the ACM Symposium
on Parallelism in Algorithms and Architectures (SPAA), 201
BLITZEN: A highly integrated massively parallel machine
The architecture and VLSI design of a new massively parallel processing array chip are described. The BLITZEN processing element array chip, which contains 1.1 million transistors, serves as the basis for a highly integrated, miniaturized, high-performance, massively parallel machine that is currently under development. Each processing element has 1K bits of static RAM and performs bit-serial processing with functional elements for arithmetic, logic, and shifting
A Paradox of State-Dependent Diffusion and How to Resolve It
Consider a particle diffusing in a confined volume which is divided into two
equal regions. In one region the diffusion coefficient is twice the value of
the diffusion coefficient in the other region. Will the particle spend equal
proportions of time in the two regions in the long term? Statistical mechanics
would suggest yes, since the number of accessible states in each region is
presumably the same. However, another line of reasoning suggests that the
particle should spend less time in the region with faster diffusion, since it
will exit that region more quickly. We demonstrate with a simple microscopic
model system that both predictions are consistent with the information given.
Thus, specifying the diffusion rate as a function of position is not enough to
characterize the behaviour of a system, even assuming the absence of external
forces. We propose an alternative framework for modelling diffusive dynamics in
which both the diffusion rate and equilibrium probability density for the
position of the particle are specified by the modeller. We introduce a
numerical method for simulating dynamics in our framework that samples from the
equilibrium probability density exactly and is suitable for discontinuous
diffusion coefficients.Comment: 21 pages, 6 figures. Second round of revisions. This is the version
that will appear in Proc Roy So
High-resolution investigations of ripple structures formed by femtosecond laser irradiation of silicon
We report on the structural investigation of self-organized periodic microstructures (ripples) generated in Si(100) targets after multishot irradiation by approximately 100-fs to 800-nm laser pulses at intensities near the single shot ablation threshold. Inspection by surface sensitive microscopy, e.g., atomic force microscopy (AFM) or scanning electron microscopy (SEM), and conventional and high-resolution transmission electron microscopy reveal complex structural modifications upon interaction with the laser: even well outside the ablated area, the target surface exhibits fine ripple-like undulations, consisting of alternating crystalline and amorphous silicon. Inside the heavily modified area, amorphous silicon is found only in the valleys but not on the crests which, instead, consist of highly distorted crystalline phases, rich in defects
Self-replication and evolution of DNA crystals
Is it possible to create a simple physical system that is capable of replicating itself? Can such a system evolve interesting behaviors, thus allowing it to adapt to a wide range of environments? This paper presents a design for such a replicator constructed exclusively from synthetic DNA. The basis for the replicator is crystal growth: information is stored in the spatial arrangement of monomers and copied from layer to layer by templating. Replication is achieved by fragmentation of crystals, which produces new crystals that carry the same information. Crystal replication avoids intrinsic problems associated with template-directed mechanisms for replication of one-dimensional polymers. A key innovation of our work is that by using programmable DNA tiles as the crystal monomers, we can design crystal growth processes that apply interesting selective pressures to the evolving sequences. While evolution requires that copying occur with high accuracy, we show how to adapt error-correction techniques from algorithmic self-assembly to lower the replication error rate as much as is required
Thermodynamic entropy of a many body energy eigenstate
It is argued that a typical many body energy eigenstate has a well defined
thermodynamic entropy and that individual eigenstates possess thermodynamic
characteristics analogous to those of generic isolated systems. We examine
large systems with eigenstate energies equivalent to finite temperatures. When
quasi-static evolution of a system is adiabatic (in the quantum mechanical
sense), two coupled subsystems can transfer heat from one subsystem to another
yet remain in an energy eigenstate. To explicitly construct the entropy from
the wave function, degrees of freedom are divided into two unequal parts. It is
argued that the entanglement entropy between these two subsystems is the
thermodynamic entropy per degree of freedom for the smaller subsystem. This is
done by tracing over the larger subsystem to obtain a density matrix, and
calculating the diagonal and off-diagonal contributions to the entanglement
entropy.Comment: 18 page
Electronic Theory for the Nonlinear Magneto-Optical Response of Transition-Metals at Surfaces and Interfaces: Dependence of the Kerr-Rotation on Polarization and on the Magnetic Easy Axis
We extend our previous study of the polarization dependence of the nonlinear
optical response to the case of magnetic surfaces and buried magnetic
interfaces. We calculate for the longitudinal and polar configuration the
nonlinear magneto-optical Kerr rotation angle. In particular, we show which
tensor elements of the susceptibilities are involved in the enhancement of the
Kerr rotation in nonlinear optics for different configurations and we
demonstrate by a detailed analysis how the direction of the magnetization and
thus the easy axis at surfaces and buried interfaces can be determined from the
polarization dependence of the nonlinear magneto-optical response, since the
nonlinear Kerr rotation is sensitive to the electromagnetic field components
instead of merely the intensities. We also prove from the microscopic treatment
of spin-orbit coupling that there is an intrinsic phase difference of
90 between tensor elements which are even or odd under magnetization
reversal in contrast to linear magneto-optics. Finally, we compare our results
with several experiments on Co/Cu films and on Co/Au and Fe/Cr multilayers. We
conclude that the nonlinear magneto-optical Kerr-effect determines uniquely the
magnetic structure and in particular the magnetic easy axis in films and at
multilayer interfaces.Comment: 23 pages Revtex, preprintstyle, 2 uuencoded figure
Restricted random walk model as a new testing ground for the applicability of q-statistics
We present exact results obtained from Master Equations for the probability
function P(y,T) of sums of the positions x_t of a discrete
random walker restricted to the set of integers between -L and L. We study the
asymptotic properties for large values of L and T. For a set of position
dependent transition probabilities the functional form of P(y,T) is with very
high precision represented by q-Gaussians when T assumes a certain value
. The domain of y values for which the q-Gaussian apply
diverges with L. The fit to a q-Gaussian remains of very high quality even when
the exponent of the transition probability g(x)=|x/L|^a+p with 0<p<<1 is
different from 1, all though weak, but essential, deviation from the q-Gaussian
does occur for . To assess the role of correlations we compare the T
dependence of P(y,T) for the restricted random walker case with the equivalent
dependence for a sum y of uncorrelated variables x each distributed according
to 1/g(x).Comment: 5 pages, 7 figs, EPL (2011), in pres
Quantum heat engines and nonequilibrium temperature
A pair of two-level systems initially prepared in different thermal states
and coupled to an external reversible work source, do not in general reach a
common temperature at the end of a unitary work extraction process. We define
an effective temperature for the final nonequilibrium but passive state of the
bipartite quantum system and analyse its properties.Comment: Five pages, Accepted for publication in Physical Review
Landau-Drude Diamagnetism: Fluctuation, Dissipation and Decoherence
Starting from a quantum Langevin equation (QLE) of a charged particle coupled
to a heat bath in the presence of an external magnetic field, we present a
fully dynamical calculation of the susceptibility tensor. We further evaluate
the position autocorrelation function by using the Gibbs ensemble approach.
This quantity is shown to be related to the imaginary part of the dynamical
susceptibility, thereby validating the fluctuation-dissipation theorem in the
context of dissipative diamagnetism. Finally we present an overview of
coherence-to-decoherence transition in the realm of dissipative diamagnetism at
zero temperature. The analysis underscores the importance of the details of the
relevant physical quantity, as far as coherence to decoherence transition is
concerned.Comment: 8 pages and 5 figure
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