Packing defects and the width of biopolymer bundles

The formation of bundles composed of actin filaments and cross-linking proteins is an essential process in the maintenance of the cells' cytoskeleton. It has also been recreated by in-vitro experiments, where actin networks are routinely produced to mimic and study the cellular structures. It has long been observed that these bundles seem to have a well defined width distribution, which has not been adequately described theoretically. We propose here that packing defects of the filaments, quenched and random, contribute an effective repulsion that counters the cross-linking adhesion energy and leads to a well defined bundle width. This is a two-dimensional strain-field version of the classic Rayleigh instability of charged droplets

Theory of Drop Formation

We consider the motion of an axisymmetric column of Navier-Stokes fluid with a free surface. Due to surface tension, the thickness of the fluid neck goes to zero in finite time. After the singularity, the fluid consists of two halves, which constitute a unique continuation of the Navier-Stokes equation through the singular point. We calculate the asymptotic solutions of the Navier-Stokes equation, both before and after the singularity. The solutions have scaling form, characterized by universal exponents as well as universal scaling functions, which we compute without adjustable parameters

Non-diffracting Optical Beams in a Three-level Raman System

Diffractionless propagation of optical beams through atomic vapors is investigated. The atoms in the vapor are operated in a three-level Raman configuration. A suitably chosen control beam couples to one of the transitions, and thereby creates a spatially varying index of refraction modulation in the warm atomic vapor for a probe beam which couples to the other transition in the atoms. We show that a Laguerre-Gaussian control beam allows to propagate single Gaussian probe field modes as well as multi-Gaussian modes and non-Gaussian modes over macroscopic distances without diffraction. This opens perspectives for the propagation of arbitrary images through warm atomic vapors.Comment: 8 pages, 7 figure

Bubble Pinch-Off in a Rotating Flow

We create air bubbles at the tip of a “bathtub vortex” which reaches to a finite depth. The bathtub vortex is formed by letting water drain through a small hole at the bottom of a rotating cylindrical container. The tip of the needlelike surface dip is unstable at high rotation rates and releases bubbles which are carried down by the flow. Using high-speed imaging we find that the minimal neck radius of the unstable tip decreases in time as a power law with an exponent close to 1/3. This exponent was found by Gordillo et al. [Phys. Rev. Lett. 95, 194501 (2005)] to govern gas flow driven pinch-off, and indeed we find that the volume oscillations of the tip creates a considerable air flow through the neck. We argue that the Bernoulli pressure reduction caused by this air flow can become sufficient to overcome the centrifugal forces and cause the final pinch-off

A hybrid finite element approach to modeling sound radiation from circular and rectangular ducts

This is the post-print version of the Article - Copyright @ 2012 Acoustical Society of AmericaA numerical model based on a hybrid finite element method is developed that seeks to join sound pressure fields in interior and exterior regions. The hybrid method is applied to the analysis of sound radiation from open pipes, or ducts, and uses mode matching to couple a finite element discretization of the region surrounding the open end of the duct to wave based modal expansions for adjoining interior and exterior regions. The hybrid method facilitates the analysis of ducts of arbitrary but uniform cross section as well the study of conical flanges and here a modal expansion based on spherical harmonics is applied. Predictions are benchmarked against analytic solutions for the limiting cases of flanged and unflanged circular ducts and excellent agreement between the two methods is observed. Predictions are also presented for flanged and unflanged rectangular ducts, and because the hybrid method retains the sparse banded and symmetric matrices of the traditional finite element method, it is shown that predictions can be obtained within an acceptable time frame even for a three dimensional problem.This study is supported by the U.K. Engineering and Physical Sciences Research Council (EPSRC)

Quantum Reciprocity Conjecture for the Non-Equilibrium Steady State

By considering the lack of history dependence in the non-equilibrium steady state of a quantum system we are led to conjecture that in such a system, there is a set of quantum mechanical observables whose retarded response functions are insensitive to the arrow of time, and which consequently satisfy a quantum analog of the Onsager reciprocity relations. Systems which satisfy this conjecture can be described by an effective Free energy functional. We demonstrate that the conjecture holds in a resonant level model of a multi-lead quantum dot.Comment: References revised to take account of related work on Onsager reciprocity in mesoscopics by Christen, and in hydrodynamics by Mclennan, Dufty and Rub

Ion-induced nucleation in polar one-component fluids

We present a Ginzburg-Landau theory of ion-induced nucleation in a gas phase of polar one-component fluids, where a liquid droplet grows with an ion at its center. By calculating the density profile around an ion, we show that the solvation free energy is larger in gas than in liquid at the same temperature on the coexistence curve. This difference much reduces the nucleation barrier in a metastable gas.Comment: 9 pagers, 9 figures, to be published in J. Chem. Phy

Linear oscillations of a compressible hemispherical bubble on a solid substrate

The linear natural and forced oscillations of a hemispherical bubble on a solid substrate are under theoretical consideration. The contact line dynamics is taken into account with the Hocking condition, which eventually leads to interaction of the shape and volume oscillations. Resonant phenomena, mostly pronounced for the bubble with the fixed contact line or with the fixed contact angle, are found out. The limiting case of weakly compressible bubble is studied. The general criterion identifying whether the compressibility of a bubble can be neglected is obtained.Comment: new slightly extended version with some minor changes, added journal reference and DOI information; 12 pages, 8 figures, published in Physics of Fluid

Asymptotic behaviour of the Rayleigh--Taylor instability

We investigate long time numerical simulations of the inviscid Rayleigh-Taylor instability at Atwood number one using a boundary integral method. We are able to attain the asymptotic behavior for the spikes predicted by Clavin & Williams\cite{clavin} for which we give a simplified demonstration. In particular we observe that the spike's curvature evolves like $t^3$ while the overshoot in acceleration shows a good agreement with the suggested $1/t^5$ law. Moreover, we obtain consistent results for the prefactor coefficients of the asymptotic laws. Eventually we exhibit the self-similar behavior of the interface profile near the spike.Comment: 4 pages, 6 figure

Plasma and cavitation dynamics during pulsed laser microsurgery in vivo

We compare the plasma and cavitation dynamics underlying pulsed laser microsurgery in water and in fruit fly embryos (in vivo) - specifically for nanosecond pulses at 355 and 532 nm. We find two key differences. First, the plasma-formation thresholds are lower in vivo - especially at 355 nm - due to the presence of endogenous chromophores that serve as additional sources for plasma seed electrons. Second, the biological matrix constrains the growth of laser-induced cavitation bubbles. Both effects reduce the disrupted region in vivo when compared to extrapolations from measurements in water.Comment: 9 pages, 5 figure