3,081 research outputs found
Visualization of comparative genomic analyses by BLAST score ratio
BACKGROUND: The first microbial genome sequence, Haemophilus influenzae, was published in 1995. Since then, more than 400 microbial genome sequences have been completed or commenced. This massive influx of data provides the opportunity to obtain biological insights through comparative genomics. However few tools are available for this scale of comparative analysis. RESULTS: The BLAST Score Ratio (BSR) approach, implemented in a Perl script, classifies all putative peptides within three genomes using a measure of similarity based on the ratio of BLAST scores. The output of the BSR analysis enables global visualization of the degree of proteome similarity between all three genomes. Additional output enables the genomic synteny (conserved gene order) between each genome pair to be assessed. Furthermore, we extend this synteny analysis by overlaying BSR data as a color dimension, enabling visualization of the degree of similarity of the peptides being compared. CONCLUSIONS: Combining the degree of similarity, synteny and annotation will allow rapid identification of conserved genomic regions as well as a number of common genomic rearrangements such as insertions, deletions and inversions. The script and example visualizations are available at:
Radio Detection of Cosmic Ray Air Showers with Codalema
Studies of the radio detection of Extensive Air Showers is the goal of the
demonstrative experiment CODALEMA. Previous analysis have demonstrated that
detection around eV was achieved with this set-up. New results
allow for the first time to study the topology of the electric field associated
to EAS events on a event by event basis.Comment: 6 pages, 4 figures Proceedings of the Rencontres de Moriond, Very
High Energy Phenomena in the Universe, La Thuile, Italy (March 12-19, 2005
Radio Detection of Extensive Air Showers with CODALEMA
The principle and performances of the CODALEMA experimental device, set up to
study the possibility of high energy cosmic rays radio detection, are
presented. Radio transient signals associated to cosmic rays have been
identified, for which arrival directions and shower's electric field topologies
have been extracted from the antenna signals. The measured rate, about 1 event
per day, corresponds to an energy threshold around 5.10^16 eV. These results
allow to determine the perspectives offered by the present experimental design
for radiodetection of UHECR at a larger scale.Comment: 4 pages and 3 figures. To appear in the Proceedings of the 29th ICRC,
Pune (2005
Radio Detection of Cosmic Ray Extensive Air Showers: present status of the CODALEMA experiment
Data acquisition and analysis for the CODALEMA experiment, in operation for
more than one year, has provided improved knowledge of the characteristics of
this new device. At the same time, an important effort has been made to develop
processing techniques for extracting transient signals from data containing
interference.Comment: september 200
Radiodetection of Cosmic Ray Extensive Air Showers
We present the characteristics and performance of a demonstration experiment
devoted to the observation of ultra high- energy cosmic ray extensive air
showers using a radiodetection technique. In a first step, one antenna narrowed
band filtered acting as trigger, with a 4 threshold above sky
background-level, was used to tag any radio transient in coincidence on the
antenna array. Recently, the addition of 4 particle detectors has allowed us to
observe cosmic ray events in coincidence with antennas
Common iliac aneurysms with short or absent proximal necks: Endoluminal repair with a covered endoprosthesis
AbstractEur J Vasc Endovasc Surg 26, 334-336 (2003
Experimental evidence of thermal fluctuations on the X-ray absorption near-edge structure at the aluminum K-edge
After a review of temperature-dependent experimental x-ray absorption
near-edge structure (XANES) and related theoretical developments, we present
the Al K-edge XANES spectra of corundum and beryl for temperature ranging from
300K to 930K. These experimental results provide a first evidence of the role
of thermal fluctuation in XANES at the Al K-edge especially in the pre-edge
region. The study is carried out by polarized XANES measurements of single
crystals. For any orientation of the sample with respect to the x-ray beam, the
pre-edge peak grows and shifts to lower energy with temperature. In addition
temperature induces modifications in the position and intensities of the main
XANES features. First-principles DFT calculations are performed for both
compounds. They show that the pre-edge peak originates from forbidden 1s to 3s
transitions induced by vibrations. Three existing theoretical models are used
to take vibrations into account in the absorption cross section calculations:
i) an average of the XANES spectra over the thermal displacements of the
absorbing atom around its equilibrium position, ii) a method based on the crude
Born-Oppenheimer approximation where only the initial state is averaged over
thermal displacements, iii) a convolution of the spectra obtained for the atoms
at the equilibrium positions with an approximate phonon spectral function. The
theoretical spectra so obtained permit to qualitatively understand the origin
of the spectral modifications induced by temperature. However the correct
treatment of thermal fluctuation in XANES spectroscopy requires more
sophisticated theoretical tools
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