172 research outputs found
Inference and Optimization of Real Edges on Sparse Graphs - A Statistical Physics Perspective
Inference and optimization of real-value edge variables in sparse graphs are
studied using the Bethe approximation and replica method of statistical
physics. Equilibrium states of general energy functions involving a large set
of real edge-variables that interact at the network nodes are obtained in
various cases. When applied to the representative problem of network resource
allocation, efficient distributed algorithms are also devised. Scaling
properties with respect to the network connectivity and the resource
availability are found, and links to probabilistic Bayesian approximation
methods are established. Different cost measures are considered and algorithmic
solutions in the various cases are devised and examined numerically. Simulation
results are in full agreement with the theory.Comment: 21 pages, 10 figures, major changes: Sections IV to VII updated,
Figs. 1 to 3 replace
Optimal Resource Allocation in Random Networks with Transportation Bandwidths
We apply statistical physics to study the task of resource allocation in
random sparse networks with limited bandwidths for the transportation of
resources along the links. Useful algorithms are obtained from recursive
relations. Bottlenecks emerge when the bandwidths are small, causing an
increase in the fraction of idle links. For a given total bandwidth per node,
the efficiency of allocation increases with the network connectivity. In the
high connectivity limit, we find a phase transition at a critical bandwidth,
above which clusters of balanced nodes appear, characterised by a profile of
homogenized resource allocation similar to the Maxwell's construction.Comment: 28 pages, 11 figure
Optimal Location of Sources in Transportation Networks
We consider the problem of optimizing the locations of source nodes in
transportation networks. A reduction of the fraction of surplus nodes induces a
glassy transition. In contrast to most constraint satisfaction problems
involving discrete variables, our problem involves continuous variables which
lead to cavity fields in the form of functions. The one-step replica symmetry
breaking (1RSB) solution involves solving a stable distribution of functionals,
which is in general infeasible. In this paper, we obtain small closed sets of
functional cavity fields and demonstrate how functional recursions are
converted to simple recursions of probabilities, which make the 1RSB solution
feasible. The physical results in the replica symmetric (RS) and the 1RSB
frameworks are thus derived and the stability of the RS and 1RSB solutions are
examined.Comment: 38 pages, 18 figure
A computational analysis of lower bounds for big bucket production planning problems
In this paper, we analyze a variety of approaches to obtain lower bounds for multi-level production planning problems with big bucket capacities, i.e., problems in which multiple items compete for the same resources. We give an extensive survey of both known and new methods, and also establish relationships between some of these methods that, to our knowledge, have not been presented before. As will be highlighted, understanding the substructures of difficult problems provide crucial insights on why these problems are hard to solve, and this is addressed by a thorough analysis in the paper. We conclude with computational results on a variety of widely used test sets, and a discussion of future research
High Throughput Microplate Respiratory Measurements Using Minimal Quantities Of Isolated Mitochondria
Recently developed technologies have enabled multi-well measurement of O2 consumption, facilitating the rate of mitochondrial research, particularly regarding the mechanism of action of drugs and proteins that modulate metabolism. Among these technologies, the Seahorse XF24 Analyzer was designed for use with intact cells attached in a monolayer to a multi-well tissue culture plate. In order to have a high throughput assay system in which both energy demand and substrate availability can be tightly controlled, we have developed a protocol to expand the application of the XF24 Analyzer to include isolated mitochondria. Acquisition of optimal rates requires assay conditions that are unexpectedly distinct from those of conventional polarography. The optimized conditions, derived from experiments with isolated mouse liver mitochondria, allow multi-well assessment of rates of respiration and proton production by mitochondria attached to the bottom of the XF assay plate, and require extremely small quantities of material (1–10 µg of mitochondrial protein per well). Sequential measurement of basal, State 3, State 4, and uncoupler-stimulated respiration can be made in each well through additions of reagents from the injection ports. We describe optimization and validation of this technique using isolated mouse liver and rat heart mitochondria, and apply the approach to discover that inclusion of phosphatase inhibitors in the preparation of the heart mitochondria results in a specific decrease in rates of Complex I-dependent respiration. We believe this new technique will be particularly useful for drug screening and for generating previously unobtainable respiratory data on small mitochondrial samples
Lawson criterion for ignition exceeded in an inertial fusion experiment
For more than half a century, researchers around the world have been engaged in attempts to achieve fusion ignition as a proof of principle of various fusion concepts. Following the Lawson criterion, an ignited plasma is one where the fusion heating power is high enough to overcome all the physical processes that cool the fusion plasma, creating a positive thermodynamic feedback loop with rapidly increasing temperature. In inertially confined fusion, ignition is a state where the fusion plasma can begin "burn propagation" into surrounding cold fuel, enabling the possibility of high energy gain. While "scientific breakeven" (i.e., unity target gain) has not yet been achieved (here target gain is 0.72, 1.37 MJ of fusion for 1.92 MJ of laser energy), this Letter reports the first controlled fusion experiment, using laser indirect drive, on the National Ignition Facility to produce capsule gain (here 5.8) and reach ignition by nine different formulations of the Lawson criterion
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