Microarray and bioinformatic analysis of conventional ameloblastoma: an observational analysis

Ameloblastoma is a highly aggressive odontogenic tumor, and its pathogenesis is associated with many participating genes. Objective: We aimed to identify and validate new critical genes of conventional ameloblastoma using microarray and bioinformatics analysis. Methodology: Gene expression microarray and bioinformatic analysis were performed using CHIP H10KA and DAVID software for enrichment. Protein-protein interactions (PPI) were visualized using STRING-Cytoscape with MCODE plugin, followed by Kaplan-Meier and GEPIA analyses that were used for the candidate’s postulation. RT-qPCR and IHC assays were performed to validate the bioinformatic approach. Results: 376 upregulated genes were identified. PPI analysis revealed 14 genes that were validated by Kaplan-Meier and GEPIA resulting in PDGFA and IL2RA as candidate genes. The RT-qPCR analysis confirmed their intense expression. Immunohistochemistry analysis showed that PDGFA expression is parenchyma located. Conclusion: With bioinformatics methods, we can identify upregulated genes in conventional ameloblastoma, and with RT-qPCR and immunoexpression analysis validate that PDGFA could be a more specific and localized therapeutic target

Identification of genes modulated by interferon gamma in breast cancer cells

Interferon gamma (IFNγ) plays a context-dependent dual tumor-suppressor and pro-tumorigenic roles in cancer. IFNγ induces morphological changes in breast cancer (BC) cells with or without estrogen receptor alpha (ERα) expression. However, IFNγ-regulated genes in BC cells remain unexplored. Here, we performed a cDNA microarray analysis of MCF-7 (ERα+) and MDA-MB-231 (HER2-/PR-/ERα-) cells with and without IFNγ treatment. We identified specific IFNγ−modulated genes in each cell type, and a small group of genes regulated by IFNγ common in both cell types. IFNγ treatment for an extended time mainly repressed gene expression shared by both cell types. Nonetheless, some of these IFNγ-repressed genes were seemingly deregulated in human mammary tumor samples, along with decreased IFNGR1 (an IFNγ receptor) expression. Thus, IFNγ signaling-elicited anti-tumor activities may be mediated by the downregulation of main IFNγ target genes in BC; however, it may be deregulated by the tumor microenvironment in a tumor stage-dependent manner

Eslicarbazepine, but Not Lamotrigine or Ranolazine, Shows Anticonvulsant Efficacy in Carbamazepine-Resistant Rats Developed by Window-Pentylenetetrazole Kindling

Approximately 30% of epileptic patients develop Drug-Resistant Epilepsy. Based on evidence that shows a loss of efficacy in some sodium channel blocker antiseizure drugs in epilepsy, we focus our study on assessing the anticonvulsant efficacy of different sodium channel blockers on carbamazepine (CBZ)-resistant seizures generated using the window-pentylenetetrazole (PTZ) kindling model to verify whether one of these drugs presents some anticonvulsant effect that could have potential therapeutic use. Wistar rats were treated with a subthreshold dose of PTZ (35 mg/kg) three times/week. Fully kindled rats were then treated with a single dose of CBZ (40 mg/kg i.p.) at 2, 9 and 16 days after their last kindling stimulation to obtain CBZ-resistant rats. Right after, sodium channel blockers were tested for anticonvulsant action (lamotrigine, 30 mg/kg i.p.; eslicarbazepine, 150 or 300 mg/kg i.p.; ranolazine, 10, 20 or 40 mg/kg i.p.). Behavioral parameters included severity, latency or duration of convulsions. Our data showed for the first time directly that eslicarbazepine does have an anticonvulsant effect over CBZ-resistant seizures, while lamotrigine shows drug resistance and ranolazine demonstrates severe seizure worsening. It is of potential therapeutic relevance that eslicarbazepine could be useful to control seizures resistant to common sodium channel blockers such as CBZ

Mecanismos básicos en la modulación de la expresión génica: algunas implicaciones en el envejecimiento del cerebro

Epigenetic and transcriptional regulation are two interconnected processes regulating the activation and deactivation of all genes. This controlled modulation of gene expression determines the phenotype of different cell types, including their morphology, functionality, and ability to respond to diverse conditions. Regulation of epigenetics does not involve changes in the DNA sequence; however, it alters the formation of several protein complexes that are capable of modifying the chromatin structure to modulate the expression of genes. Epigenetic modifications are highly regulated by several factors such as diet, environment, and physical activity. Furthermore, under a disease condition or particular health state, and during aging, changes have been reported in a cell’s epigenome. Notably, aging is considered as a direct risk factor for the development of neurodegenerative diseases. This review presents a general overview of transcriptional regulation and epigenetic mechanisms, and their relationship with the aging process. Alterations in epigenetic mechanisms are evident during aging, which may impact the development of neurodegenerative diseases. La regulación transcripcional y epigenética son dos procesos interconectados, responsables del encendido y apagado de la expresión de todos los genes. Esta fina modulación de la expresión génica determina el fenotipo de los diferentes tipos celulares, su morfología, su funcionalidad y su habilidad de responder ante diversas condiciones. La regulación epigenética no implica cambios en la secuencia del DNA, pero sí en la generación de numerosos complejos proteicos capaces de modificar la estructura de la cromatina y así modular la expresión génica. La epigenética en los organismos es altamente regulada por varios factores que incluyen la dieta, el ambiente y la actividad física, entre otros. Además, bajo una condición de enfermedad o un estado saludable, así como durante el envejecimiento, se reportan diferencias entre los epigenomas de las células. De manera importante, el envejecimiento es un factor de riesgo directo para el desarrollo de enfermedades neurodegenerativas. En esta revisión presentamos brevemente un panorama general del proceso de regulación transcripcional y de los mecanismos epigenéticos, así como su relación con el proceso del envejecimiento. Alteraciones en los mecanismos epigéneticos son evidentes durante el avance de la edad, los cuales podrían tener alguna influencia en el desarrollo de enfermedades neurodegenerativas

Implications of the Immune Polymorphisms of the Host and the Genetic Variability of SARS-CoV-2 in the Development of COVID-19

The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is responsible for the current pandemic affecting almost all countries in the world. SARS-CoV-2 is the agent responsible for coronavirus disease 19 (COVID-19), which has claimed millions of lives around the world. In most patients, SARS-CoV-2 infection does not cause clinical signs. However, some infected people develop symptoms, which include loss of smell or taste, fever, dry cough, headache, severe pneumonia, as well as coagulation disorders. The aim of this work is to report genetic factors of SARS-CoV-2 and host-associated to severe COVID-19, placing special emphasis on the viral entry and molecules of the immune system involved with viral infection. Besides this, we analyze SARS-CoV-2 variants and their structural characteristics related to the binding to polymorphic angiotensin-converting enzyme type 2 (ACE2). Additionally, we also review other polymorphisms as well as some epigenetic factors involved in the immunopathogenesis of COVID-19. These factors and viral variability could explain the increment of infection rate and/or in the development of severe COVID-19