Directed flow in non-adiabatic stochastic pumps

We analyze the operation of a molecular machine driven by the non-adiabatic variation of external parameters. We derive a formula for the integrated flow from one configuration to another, obtain a "no-pumping theorem" for cyclic processes with thermally activated transitions, and show that in the adiabatic limit the pumped current is given by a geometric expression.Comment: 5 pages, 2 figures, very minor change

Intermediate statistics for a system with symplectic symmetry: the Dirac rose graph

We study the spectral statistics of the Dirac operator on a rose-shaped graph---a graph with a single vertex and all bonds connected at both ends to the vertex. We formulate a secular equation that generically determines the eigenvalues of the Dirac rose graph, which is seen to generalise the secular equation for a star graph with Neumann boundary conditions. We derive approximations to the spectral pair correlation function at large and small values of spectral spacings, in the limit as the number of bonds approaches infinity, and compare these predictions with results of numerical calculations. Our results represent the first example of intermediate statistics from the symplectic symmetry class.Comment: 26 pages, references adde

The Impact of Atmospheric Dry Deposition Associated Microbes on the Southeastern Mediterranean Sea Surface Water following an Intense Dust Storm

This study explores the potential impacts of microbes deposited into the surface seawater of the southeastern Mediterranean Sea (SEMS) along with atmospheric particles on marine autotrophic and heterotrophic production. We compared in situ changes in autotrophic and heterotrophic microbial abundance and production rates before and during an intense dust storm event in early September 2015. Additionally, we measured the activity of microbes associated with atmospheric dry deposition (also referred to as airborne microbes) in sterile SEMS water using the same particles collected during the dust storm. A high diversity of prokaryotes and a low diversity of autotrophic eukaryotic algae were delivered to surface SEMS waters by the storm. Autotrophic airborne microbial abundance and activity were low, contributing ~1% of natural abundance in SEMS water and accounting for 1–4% to primary production. Airborne heterotrophic bacteria comprised 30–50% of the cells and accounted for 13–42% of bacterial production. Our results demonstrate that atmospheric dry deposition may supply not only chemical constitutes but also microbes that can affect ambient microbial populations and their activity in the surface ocean. Airborne microbes may play a greater role in ocean biogeochemistry in the future in light of the expected enhancement of dust storm durations and frequencies due to climate change and desertification processes

Lower bounds on dissipation upon coarse graining

By different coarse-graining procedures we derive lower bounds on the total mean work dissipated in Brownian systems driven out of equilibrium. With several analytically solvable examples we illustrate how, when, and where the information on the dissipation is captured.Comment: 11 pages, 8 figure

Fluctuation relations and coarse-graining

We consider the application of fluctuation relations to the dynamics of coarse-grained systems, as might arise in a hypothetical experiment in which a system is monitored with a low-resolution measuring apparatus. We analyze a stochastic, Markovian jump process with a specific structure that lends itself naturally to coarse-graining. A perturbative analysis yields a reduced stochastic jump process that approximates the coarse-grained dynamics of the original system. This leads to a non-trivial fluctuation relation that is approximately satisfied by the coarse-grained dynamics. We illustrate our results by computing the large deviations of a particular stochastic jump process. Our results highlight the possibility that observed deviations from fluctuation relations might be due to the presence of unobserved degrees of freedom.Comment: 19 pages, 6 figures, very minor change

Clinical safety and efficacy of novel antifungal, fosmanogepix, for the treatment of candidaemia: results from a Phase 2 trial

Safety; Antifungal; CandidaemiaSeguridad; Antifúngico; CandidemiaSeguretat; Antifúngic; CandidèmiaBackground Fosmanogepix is a first-in-class antifungal targeting the fungal enzyme Gwt1, with broad-spectrum activity against yeasts and moulds, including multidrug-resistant fungi, formulated for intravenous (IV) and oral administration. Methods This global, multicenter, non-comparative study evaluated the safety and efficacy of fosmanogepix for first-line treatment of candidaemia in non-neutropenic adults. Participants with candidaemia, defined as a positive blood culture for Candida spp. within 96 h prior to study entry, with ≤2 days of prior systemic antifungals, were eligible. Participants received fosmanogepix for 14 days: 1000 mg IV twice daily on Day 1, followed by maintenance 600 mg IV once daily, and optional switch to 700 mg orally once daily from Day 4. Eligible participants who received at least one dose of fosmanogepix and had confirmed diagnosis of candidaemia (<96 h of treatment start) composed the modified intent-to-treat (mITT) population. Primary efficacy endpoint was treatment success at the end of study treatment (EOST) as determined by the Data Review Committee. Success was defined as clearance of Candida from blood cultures with no additional antifungal treatment and survival at the EOST. Results Treatment success was 80% (16/20, mITT; EOST) and Day 30 survival was 85% (17/20; 3 deaths unrelated to fosmanogepix). Ten of 21 (48%) were switched to oral fosmanogepix. Fosmanogepix was well tolerated with no treatment-related serious adverse events/discontinuations. Fosmanogepix had potent in vitro activity against baseline isolates of Candida spp. (MICrange: CLSI, 0.002–0.03 mg/L). Conclusions Results from this single-arm Phase 2 trial suggest that fosmanogepix may be a safe, well-tolerated, and efficacious treatment for non-neutropenic patients with candidaemia, including those with renal impairment.The study was funded by Amplyx, now a subsidiary of Pfizer Inc

The non-equilibrium steady state of sparse systems with nontrivial topology

We study the steady state of a multiply-connected system that is driven out of equilibrium by a sparse perturbation. The prototype example is an $N$-site ring coupled to a thermal bath, driven by a stationary source that induces transitions with log-wide distributed rates. An induced current arises, which is controlled by the strength of the driving, and an associated topological term appears in the expression for the energy absorption rate. Due to the sparsity, the crossover from linear response to saturation is mediated by an intermediate regime, where the current is exponentially small in $\sqrt{N}$, which is related to the work of Sinai on "random walk in a random environment".Comment: 6 pages, 4 figure

Relationship between thermohaline and biochemical patterns in the levantine upper and intermediate water masses, Southeastern Mediterranean Sea (2013–2021)

The relationships between the interannual variations of the Levantine intermediate water (LIW) core properties and the corresponding biochemical variations in the euphotic zone were systematically studied in the Southeastern Mediterranean during 2013–2021 and since 2002 based on a previous study. Salinity and temperature interannual fluctuations in the LIW continue to follow the Adriatic–Ionian Bimodal Oscillating System (BiOS) mechanism, with salinity and temperature peaks in the years 2008–2010, 2014–2015, and 2018–2019 coinciding with periods of anticyclonic circulation of the North Ionian Gyre (NIG). During these anticyclonic periods, the transport of Atlantic Water into the Levant is reduced together with the transport of LIW out of the basin. These interannual fluctuations are superimposed on a long-term warming trend clearly evident from previous studies, showing a maximal temperature in 2018–2019, higher than the previously mentioned temperature peaks by ~0.7°C and ~0.4°C. The enhanced warming in 2018–2019 has caused a decrease in density (sigma) values of the LIW core, which gave way to the shallowest record of this water mass (~110-m depth), bringing it well within the lower photic zone. We suggest that a higher level of nutrients became available, supporting the observed long-term rise of the intergraded chlorophyll a (Chl.a) (0.89 mg m−2 year−1), with a maximum recorded during 2018–2019. The long-term record of the mixed layer depths shows no significant change; thus, the uplift of nutrients during winter mixing cannot support the trend and variations of the integrated Chl.a. Additional biological parameters of specific pico-phytoplankton populations and integrated bacterial production and abundance were measured in 2013–2021, but the measurements were too sparse to follow a clear interannual dynamics. Yet significantly higher average levels for integrated primary production and bacterial abundances were observed during the anticyclonic period (as for Chl.a). The combined impacts of the BiOS mechanism and global warming, and hence the increase in LIW residence time and buoyancy, may impact the primary producers’ biomass at the photic zone. This latter feedback may slightly counter the enhanced oligotrophication due to enhanced stratification

dd→3Hendd\to {^3}He n reaction at intermediate energies

The $dd\to ^3He n$ reaction is considered at the energies between 200 MeV and 520 MeV. The Alt-Grassberger-Sandhas equations are iterated up to the lowest order terms over the nucleon-nucleon t-matrix. The parameterized ${^3He}$ wave function including five components is used. The angular dependence of the differential cross section and energy dependence of tensor analyzing power $T_{20}$ at the zero scattering angle are presented in comparison with the experimental data

Spectral properties of quantized barrier billiards

The properties of energy levels in a family of classically pseudointegrable systems, the barrier billiards, are investigated. An extensive numerical study of nearest-neighbor spacing distributions, next-to-nearest spacing distributions, number variances, spectral form factors, and the level dynamics is carried out. For a special member of the billiard family, the form factor is calculated analytically for small arguments in the diagonal approximation. All results together are consistent with the so-called semi-Poisson statistics.Comment: 8 pages, 9 figure